Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21585

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21570 and BPHYT_RS21575 are separated by 567 nucleotidesBPHYT_RS21575 and BPHYT_RS21580 overlap by 11 nucleotidesBPHYT_RS21580 and BPHYT_RS21585 are separated by 8 nucleotidesBPHYT_RS21585 and BPHYT_RS21590 are separated by 40 nucleotides BPHYT_RS21570: BPHYT_RS21570 - oxidoreductase, at 398,332 to 399,021 _RS21570 BPHYT_RS21575: BPHYT_RS21575 - hypothetical protein, at 399,589 to 399,789 _RS21575 BPHYT_RS21580: BPHYT_RS21580 - hypothetical protein, at 399,779 to 399,967 _RS21580 BPHYT_RS21585: BPHYT_RS21585 - short-chain dehydrogenase, at 399,976 to 400,737 _RS21585 BPHYT_RS21590: BPHYT_RS21590 - NmrA family transcriptional regulator, at 400,778 to 401,656 _RS21590 Position (kb) 399 400 401Strain fitness (log2 ratio) -1 0 1 2at 399.118 kb on + strandat 399.119 kb on - strandat 399.258 kb on - strandat 399.468 kb on + strandat 399.627 kb on + strand, within BPHYT_RS21575at 399.827 kb on + strand, within BPHYT_RS21580at 400.167 kb on + strand, within BPHYT_RS21585at 400.314 kb on - strand, within BPHYT_RS21585at 400.329 kb on + strand, within BPHYT_RS21585at 400.421 kb on - strand, within BPHYT_RS21585at 400.710 kb on + strandat 401.077 kb on + strand, within BPHYT_RS21590

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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399,118 + +0.2
399,119 - +0.4
399,258 - +1.8
399,468 + +0.3
399,627 + BPHYT_RS21575 0.19 +0.8
399,827 + BPHYT_RS21580 0.25 -1.2
400,167 + BPHYT_RS21585 0.25 +1.2
400,314 - BPHYT_RS21585 0.44 +0.2
400,329 + BPHYT_RS21585 0.46 +0.7
400,421 - BPHYT_RS21585 0.58 +1.7
400,710 + -0.7
401,077 + BPHYT_RS21590 0.34 +0.2

Or see this region's nucleotide sequence