Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21255 and BPHYT_RS21260 overlap by 4 nucleotides BPHYT_RS21260 and BPHYT_RS21265 overlap by 1 nucleotides BPHYT_RS21265 and BPHYT_RS21270 are separated by 57 nucleotides
BPHYT_RS21255: BPHYT_RS21255 - spermidine/putrescine ABC transporter ATP-binding protein, at 329,586 to 330,665
_RS21255
BPHYT_RS21260: BPHYT_RS21260 - ABC transporter permease, at 330,662 to 331,540
_RS21260
BPHYT_RS21265: BPHYT_RS21265 - ABC transporter permease, at 331,540 to 332,478
_RS21265
BPHYT_RS21270: BPHYT_RS21270 - dihydroxy-acid dehydratase, at 332,536 to 334,296
_RS21270
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1 at 330.758 kb on + strand, within BPHYT_RS21260 at 330.770 kb on + strand, within BPHYT_RS21260 at 330.771 kb on - strand, within BPHYT_RS21260 at 330.824 kb on + strand, within BPHYT_RS21260 at 331.035 kb on - strand, within BPHYT_RS21260 at 331.086 kb on - strand, within BPHYT_RS21260 at 331.182 kb on - strand, within BPHYT_RS21260 at 331.262 kb on + strand, within BPHYT_RS21260 at 331.263 kb on - strand, within BPHYT_RS21260 at 331.263 kb on - strand, within BPHYT_RS21260 at 331.508 kb on + strand at 331.807 kb on + strand, within BPHYT_RS21265 at 331.808 kb on - strand, within BPHYT_RS21265 at 332.026 kb on + strand, within BPHYT_RS21265 at 332.027 kb on - strand, within BPHYT_RS21265 at 332.027 kb on - strand, within BPHYT_RS21265 at 332.027 kb on - strand, within BPHYT_RS21265 at 332.027 kb on - strand, within BPHYT_RS21265 at 332.191 kb on + strand, within BPHYT_RS21265 at 332.323 kb on + strand, within BPHYT_RS21265 at 332.323 kb on + strand, within BPHYT_RS21265 at 332.324 kb on - strand, within BPHYT_RS21265 at 332.326 kb on + strand, within BPHYT_RS21265 at 332.326 kb on + strand, within BPHYT_RS21265 at 332.326 kb on + strand, within BPHYT_RS21265 at 332.386 kb on + strand at 332.386 kb on + strand at 332.387 kb on - strand at 332.387 kb on - strand at 332.388 kb on + strand at 332.654 kb on - strand at 333.378 kb on + strand, within BPHYT_RS21270
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 330,758 + BPHYT_RS21260 0.11 -0.7 330,770 + BPHYT_RS21260 0.12 -0.8 330,771 - BPHYT_RS21260 0.12 +0.0 330,824 + BPHYT_RS21260 0.18 -0.9 331,035 - BPHYT_RS21260 0.42 +0.2 331,086 - BPHYT_RS21260 0.48 +0.1 331,182 - BPHYT_RS21260 0.59 +0.4 331,262 + BPHYT_RS21260 0.68 -1.4 331,263 - BPHYT_RS21260 0.68 +1.6 331,263 - BPHYT_RS21260 0.68 -0.0 331,508 + -0.5 331,807 + BPHYT_RS21265 0.28 -2.0 331,808 - BPHYT_RS21265 0.29 -0.5 332,026 + BPHYT_RS21265 0.52 -0.6 332,027 - BPHYT_RS21265 0.52 +0.2 332,027 - BPHYT_RS21265 0.52 -2.5 332,027 - BPHYT_RS21265 0.52 +0.8 332,027 - BPHYT_RS21265 0.52 -1.2 332,191 + BPHYT_RS21265 0.69 +1.1 332,323 + BPHYT_RS21265 0.83 -0.9 332,323 + BPHYT_RS21265 0.83 -0.3 332,324 - BPHYT_RS21265 0.83 +0.0 332,326 + BPHYT_RS21265 0.84 -0.0 332,326 + BPHYT_RS21265 0.84 -0.2 332,326 + BPHYT_RS21265 0.84 -1.9 332,386 + +0.4 332,386 + +0.4 332,387 - +0.1 332,387 - -0.7 332,388 + +1.1 332,654 - +0.6 333,378 + BPHYT_RS21270 0.48 -1.5
Or see this region's nucleotide sequence