Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21035

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21030 and BPHYT_RS21035 are separated by 63 nucleotidesBPHYT_RS21035 and BPHYT_RS21040 overlap by 4 nucleotides BPHYT_RS21030: BPHYT_RS21030 - ABC transporter ATP-binding protein, at 277,858 to 279,399 _RS21030 BPHYT_RS21035: BPHYT_RS21035 - ABC transporter permease, at 279,463 to 280,617 _RS21035 BPHYT_RS21040: BPHYT_RS21040 - ABC transporter permease, at 280,614 to 281,540 _RS21040 Position (kb) 279 280 281Strain fitness (log2 ratio) -1 0 1 2 3at 279.098 kb on + strand, within BPHYT_RS21030at 279.424 kb on - strandat 279.520 kb on - strandat 279.723 kb on - strand, within BPHYT_RS21035at 280.018 kb on - strand, within BPHYT_RS21035at 280.018 kb on - strand, within BPHYT_RS21035at 280.219 kb on + strand, within BPHYT_RS21035at 281.374 kb on + strand, within BPHYT_RS21040

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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279,098 + BPHYT_RS21030 0.80 +3.0
279,424 - -0.6
279,520 - +1.2
279,723 - BPHYT_RS21035 0.23 +0.1
280,018 - BPHYT_RS21035 0.48 -0.1
280,018 - BPHYT_RS21035 0.48 +1.3
280,219 + BPHYT_RS21035 0.65 +0.4
281,374 + BPHYT_RS21040 0.82 +1.4

Or see this region's nucleotide sequence