Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20355 and BPHYT_RS20360 are separated by 1 nucleotides BPHYT_RS20360 and BPHYT_RS20365 are separated by 25 nucleotides BPHYT_RS20365 and BPHYT_RS20370 are separated by 182 nucleotides
BPHYT_RS20355: BPHYT_RS20355 - ABC transporter substrate-binding protein, at 129,604 to 130,962
_RS20355
BPHYT_RS20360: BPHYT_RS20360 - beta-lactamase, at 130,964 to 131,278
_RS20360
BPHYT_RS20365: BPHYT_RS20365 - LysR family transcriptional regulator, at 131,304 to 132,221
_RS20365
BPHYT_RS20370: BPHYT_RS20370 - MFS transporter, at 132,404 to 133,672
_RS20370
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 130.576 kb on + strand, within BPHYT_RS20355 at 130.842 kb on + strand at 131.012 kb on - strand, within BPHYT_RS20360 at 131.036 kb on + strand at 131.037 kb on - strand, within BPHYT_RS20360 at 131.051 kb on + strand, within BPHYT_RS20360 at 131.285 kb on + strand at 131.285 kb on + strand at 131.288 kb on - strand at 131.404 kb on + strand, within BPHYT_RS20365 at 131.491 kb on + strand, within BPHYT_RS20365 at 132.132 kb on - strand at 132.132 kb on - strand at 132.365 kb on + strand at 132.366 kb on - strand at 132.569 kb on + strand, within BPHYT_RS20370 at 132.569 kb on + strand, within BPHYT_RS20370 at 132.570 kb on - strand, within BPHYT_RS20370 at 132.570 kb on - strand, within BPHYT_RS20370 at 133.166 kb on + strand, within BPHYT_RS20370 at 133.169 kb on - strand, within BPHYT_RS20370 at 133.172 kb on + strand, within BPHYT_RS20370
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 130,576 + BPHYT_RS20355 0.72 -0.6 130,842 + -0.4 131,012 - BPHYT_RS20360 0.15 -0.3 131,036 + +0.6 131,037 - BPHYT_RS20360 0.23 +0.2 131,051 + BPHYT_RS20360 0.28 +0.5 131,285 + +1.1 131,285 + -0.1 131,288 - +0.4 131,404 + BPHYT_RS20365 0.11 -0.3 131,491 + BPHYT_RS20365 0.20 -1.3 132,132 - -1.8 132,132 - -0.4 132,365 + +0.1 132,366 - -0.1 132,569 + BPHYT_RS20370 0.13 +0.5 132,569 + BPHYT_RS20370 0.13 -0.6 132,570 - BPHYT_RS20370 0.13 -1.7 132,570 - BPHYT_RS20370 0.13 +3.2 133,166 + BPHYT_RS20370 0.60 +0.3 133,169 - BPHYT_RS20370 0.60 +0.7 133,172 + BPHYT_RS20370 0.61 -0.6
Or see this region's nucleotide sequence