Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19565

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
4,399,912	+		BPHYT_RS19560	0.37	+2.1
4,400,334	+				+2.1
4,400,362	-				-0.4
4,400,381	-				-0.9
4,400,426	+				+1.1
4,400,427	-				-0.5
4,400,479	+				+2.1
4,400,479	+				+2.0
4,400,499	+				-0.1
4,400,500	-				+1.8
4,400,500	-				+2.2
4,400,500	-				+1.1
4,400,506	-				+1.5
4,400,506	-				+1.1
4,400,506	-				+0.7
4,400,511	-				+0.5
4,400,552	+				+0.7
4,400,553	-				-0.0
4,400,553	-				+0.6
4,400,574	+				+0.3
4,400,575	-				+1.0
4,400,616	-				+0.9
4,400,686	-				+0.5
4,400,723	+				+0.7
4,400,727	-				+1.2
4,400,729	+				-0.5
4,400,729	+				-0.1
4,400,729	+				-0.4
4,400,729	+				+1.7
4,400,730	-				+0.3
4,400,730	-				+0.1
4,400,925	-				+2.7
4,401,201	+		BPHYT_RS19565	0.31	+3.1
4,401,202	-		BPHYT_RS19565	0.31	+3.5
4,401,202	-				+2.3
4,401,202	-		BPHYT_RS19565	0.31	+2.8
4,401,348	+		BPHYT_RS19565	0.44	+2.9
4,401,349	-		BPHYT_RS19565	0.45	+3.1
4,401,522	+		BPHYT_RS19565	0.60	+3.1
4,401,523	-		BPHYT_RS19565	0.60	+2.7
4,401,523	-		BPHYT_RS19565	0.60	+2.4
4,401,523	-		BPHYT_RS19565	0.60	+3.2
4,401,523	-		BPHYT_RS19565	0.60	+3.1
4,401,553	+		BPHYT_RS19565	0.63	+3.1
4,401,600	+		BPHYT_RS19565	0.67	+1.2
4,401,600	+		BPHYT_RS19565	0.67	+3.7
4,401,600	+		BPHYT_RS19565	0.67	+3.3
4,401,600	+		BPHYT_RS19565	0.67	+2.7
4,401,601	-		BPHYT_RS19565	0.67	+2.6
4,401,601	-		BPHYT_RS19565	0.67	+2.7
4,401,601	-		BPHYT_RS19565	0.67	+3.3
4,401,601	-		BPHYT_RS19565	0.67	+2.9
4,401,885	+				+3.2
4,401,885	+				+2.5
4,401,885	+				+0.4
4,401,885	+				+2.7
4,401,886	-				+2.8
4,401,886	-				+2.7
4,401,886	-				+3.4
4,401,886	-				+2.6
4,401,886	-				+2.9
4,401,896	-				+3.0
4,402,030	-				+0.9
4,402,031	+				+2.7
4,402,032	-				+0.5
4,402,032	-				-0.4
4,402,032	-				+0.0
4,402,032	-				+1.4
4,402,049	+				+2.5
4,402,086	+				+2.6
4,402,100	+				+2.5
4,402,226	+		BPHYT_RS19570	0.11	+2.8
4,402,226	+		BPHYT_RS19570	0.11	+2.7
4,402,227	-		BPHYT_RS19570	0.11	+2.8
4,402,227	-		BPHYT_RS19570	0.11	+3.6
4,402,227	-		BPHYT_RS19570	0.11	+3.1
4,402,487	-		BPHYT_RS19570	0.32	+3.1
4,402,659	+		BPHYT_RS19570	0.47	+3.7
4,402,660	-		BPHYT_RS19570	0.47	+2.8
4,402,703	+		BPHYT_RS19570	0.50	+2.3
4,402,703	+		BPHYT_RS19570	0.50	+2.9
4,402,703	+		BPHYT_RS19570	0.50	+3.7
4,402,703	+		BPHYT_RS19570	0.50	+2.3
4,402,704	-		BPHYT_RS19570	0.50	+3.1
4,402,704	-				+2.8
4,402,704	-		BPHYT_RS19570	0.50	+2.5
4,402,729	+		BPHYT_RS19570	0.52	+2.7
4,402,729	+		BPHYT_RS19570	0.52	+3.4
4,402,730	-		BPHYT_RS19570	0.52	+2.8
4,402,739	+		BPHYT_RS19570	0.53	+2.7
4,402,739	+		BPHYT_RS19570	0.53	+2.5
4,402,739	+		BPHYT_RS19570	0.53	+2.5
4,402,739	+		BPHYT_RS19570	0.53	+2.3
4,402,740	-		BPHYT_RS19570	0.53	+2.7
4,402,790	+		BPHYT_RS19570	0.57	+3.1
4,402,790	+		BPHYT_RS19570	0.57	+2.8
4,402,790	+		BPHYT_RS19570	0.57	+3.0
4,402,790	+		BPHYT_RS19570	0.57	+2.5
4,402,790	+		BPHYT_RS19570	0.57	+2.9
4,402,791	-		BPHYT_RS19570	0.58	+3.6
4,402,791	-		BPHYT_RS19570	0.58	+2.9
4,402,791	-		BPHYT_RS19570	0.58	+2.7
4,402,791	-		BPHYT_RS19570	0.58	+2.7
4,402,791	-		BPHYT_RS19570	0.58	+3.1