Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17810 and BPHYT_RS17815 are separated by 85 nucleotides BPHYT_RS17815 and BPHYT_RS17820 are separated by 62 nucleotides BPHYT_RS17820 and BPHYT_RS17825 are separated by 808 nucleotides
BPHYT_RS17810: BPHYT_RS17810 - transcriptional regulator, at 4,018,966 to 4,019,694
_RS17810
BPHYT_RS17815: BPHYT_RS17815 - flagellar L-ring protein FlgH, at 4,019,780 to 4,020,451
_RS17815
BPHYT_RS17820: BPHYT_RS17820 - hypothetical protein, at 4,020,514 to 4,021,227
_RS17820
BPHYT_RS17825: BPHYT_RS17825 - transcriptional regulator, at 4,022,036 to 4,022,776
_RS17825
Position (kb) 4020
4021
4022 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4019.644 kb on + strand at 4019.867 kb on - strand, within BPHYT_RS17815 at 4019.898 kb on + strand, within BPHYT_RS17815 at 4019.898 kb on + strand, within BPHYT_RS17815 at 4020.217 kb on - strand, within BPHYT_RS17815 at 4020.253 kb on + strand, within BPHYT_RS17815 at 4020.254 kb on - strand, within BPHYT_RS17815 at 4020.304 kb on - strand, within BPHYT_RS17815 at 4020.440 kb on + strand at 4020.441 kb on - strand at 4020.441 kb on - strand at 4020.662 kb on + strand, within BPHYT_RS17820 at 4020.662 kb on + strand, within BPHYT_RS17820 at 4020.663 kb on - strand, within BPHYT_RS17820 at 4020.663 kb on - strand, within BPHYT_RS17820 at 4020.663 kb on - strand, within BPHYT_RS17820 at 4020.663 kb on - strand, within BPHYT_RS17820 at 4020.812 kb on - strand, within BPHYT_RS17820 at 4021.440 kb on + strand at 4021.977 kb on + strand at 4021.978 kb on - strand at 4022.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 4,019,644 + -3.4 4,019,867 - BPHYT_RS17815 0.13 -2.3 4,019,898 + BPHYT_RS17815 0.18 -0.4 4,019,898 + BPHYT_RS17815 0.18 -1.0 4,020,217 - BPHYT_RS17815 0.65 +0.4 4,020,253 + BPHYT_RS17815 0.70 +0.1 4,020,254 - BPHYT_RS17815 0.71 +0.3 4,020,304 - BPHYT_RS17815 0.78 -0.0 4,020,440 + +0.2 4,020,441 - -0.4 4,020,441 - +1.0 4,020,662 + BPHYT_RS17820 0.21 -0.5 4,020,662 + BPHYT_RS17820 0.21 -1.4 4,020,663 - BPHYT_RS17820 0.21 -0.4 4,020,663 - BPHYT_RS17820 0.21 +1.5 4,020,663 - BPHYT_RS17820 0.21 +0.1 4,020,663 - BPHYT_RS17820 0.21 -1.5 4,020,812 - BPHYT_RS17820 0.42 -1.4 4,021,440 + -0.3 4,021,977 + -1.0 4,021,978 - +0.3 4,022,077 - +0.4
Or see this region's nucleotide sequence