Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17480

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
3,958,526	-		BPHYT_RS17475	0.21	-0.2
3,958,549	-		BPHYT_RS17475	0.28	+0.3
3,958,602	+		BPHYT_RS17475	0.46	+0.9
3,958,603	-		BPHYT_RS17475	0.46	-0.6
3,958,603	-		BPHYT_RS17475	0.46	+0.3
3,958,605	-		BPHYT_RS17475	0.47	-1.2
3,958,699	-		BPHYT_RS17475	0.78	+1.0
3,958,823	+				-1.1
3,958,823	+				-0.1
3,958,824	-				-0.6
3,958,824	-				+0.0
3,958,824	-				+0.3
3,958,921	+				-1.5
3,958,921	+				-0.2
3,958,923	+				+0.4
3,958,924	-				+0.8
3,958,924	-				-0.5
3,958,933	+				-0.6
3,958,985	+				-0.8
3,959,006	+				+0.3
3,959,006	+				+0.0
3,959,214	-		BPHYT_RS17480	0.13	-0.3
3,959,378	+		BPHYT_RS17480	0.23	+0.4
3,959,379	-		BPHYT_RS17480	0.23	+0.4
3,959,379	-		BPHYT_RS17480	0.23	-0.3
3,959,652	-		BPHYT_RS17480	0.39	+3.0
3,959,720	-		BPHYT_RS17480	0.43	-1.9
3,959,887	+		BPHYT_RS17480	0.53	-0.7
3,960,161	+		BPHYT_RS17480	0.70	-0.5
3,960,251	+		BPHYT_RS17480	0.75	-0.0
3,960,251	+		BPHYT_RS17480	0.75	+0.2
3,960,252	-		BPHYT_RS17480	0.75	-0.2
3,960,272	+		BPHYT_RS17480	0.77	-0.6
3,960,273	-		BPHYT_RS17480	0.77	+0.2
3,960,573	-				+1.4
3,960,573	-				-0.7
3,960,581	+				-1.1
3,960,581	+				+0.3
3,960,582	-				+1.4
3,960,659	+				+0.1
3,960,784	+				-1.7
3,960,837	+				-0.2
3,960,837	+				-0.5
3,960,838	-				+0.6
3,960,838	-				+0.1
3,960,838	-				+0.0
3,960,838	-				-0.6
3,960,838	-				-0.5
3,960,863	+				+2.0
3,960,863	+				-2.0
3,960,864	-				+1.9
3,960,864	-				+0.4
3,960,890	+				-0.3
3,960,890	+				-0.5
3,960,890	+				-1.3
3,960,890	+				+0.5
3,960,890	+				-1.1
3,960,891	-				-0.4
3,960,891	-				-0.5
3,960,891	-				+0.1
3,960,891	-				+0.3
3,960,891	-				+0.2
3,960,894	+				+1.4
3,960,895	-				-1.8
3,960,895	-				+0.4
3,960,895	-				-1.9
3,961,276	+		BPHYT_RS17485	0.27	-0.6
3,961,276	+		BPHYT_RS17485	0.27	-0.3
3,961,277	-		BPHYT_RS17485	0.27	+0.7
3,961,277	-		BPHYT_RS17485	0.27	-1.1
3,961,279	+		BPHYT_RS17485	0.28	+0.3
3,961,280	-		BPHYT_RS17485	0.28	-1.7
3,961,303	+		BPHYT_RS17485	0.30	-1.6
3,961,303	+		BPHYT_RS17485	0.30	-1.7
3,961,303	+		BPHYT_RS17485	0.30	+3.3
3,961,452	+		BPHYT_RS17485	0.43	-0.3
3,961,590	-		BPHYT_RS17485	0.55	+0.1
3,961,646	+		BPHYT_RS17485	0.60	+0.6