Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15355

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
3,486,402	+				+0.2
3,486,403	-				-0.9
3,486,418	-				-0.1
3,486,418	-				-3.1
3,486,447	-				-0.4
3,486,447	-				+0.7
3,486,605	-				-0.3
3,486,625	+				+1.5
3,486,626	-				+0.1
3,486,626	-				+2.1
3,486,626	-				-0.2
3,486,626	-				+0.5
3,486,718	+		BPHYT_RS15350	0.24	-3.0
3,486,719	-		BPHYT_RS15350	0.24	-0.3
3,486,719	-		BPHYT_RS15350	0.24	-0.3
3,486,723	-		BPHYT_RS15350	0.24	-0.4
3,486,751	-		BPHYT_RS15350	0.29	-0.3
3,486,751	-		BPHYT_RS15350	0.29	-0.9
3,486,788	-		BPHYT_RS15350	0.35	+0.5
3,486,788	-		BPHYT_RS15350	0.35	+0.6
3,486,788	-		BPHYT_RS15350	0.35	-0.5
3,486,858	-		BPHYT_RS15350	0.47	-0.1
3,486,881	+		BPHYT_RS15350	0.51	+0.2
3,486,919	-		BPHYT_RS15350	0.58	-1.3
3,486,956	+		BPHYT_RS15350	0.64	-2.1
3,486,957	-		BPHYT_RS15350	0.64	-2.8
3,487,206	+				+0.4
3,487,206	+				-1.0
3,487,206	+				-0.3
3,487,206	+				-0.7
3,487,206	+				+0.4
3,487,206	+				-0.4
3,487,207	-				-1.4
3,487,207	-				-0.4
3,487,229	+				-3.1
3,487,230	-				-0.6
3,487,230	-				+0.1
3,487,363	+				-1.3
3,487,425	+		BPHYT_RS15355	0.16	-0.7
3,487,465	+				-0.7
3,487,508	-		BPHYT_RS15355	0.36	-0.1
3,487,515	+		BPHYT_RS15355	0.38	-1.1
3,487,516	-		BPHYT_RS15355	0.38	+1.2
3,487,614	+		BPHYT_RS15355	0.62	+1.1
3,487,614	+		BPHYT_RS15355	0.62	+0.4
3,487,615	-		BPHYT_RS15355	0.62	+1.1
3,487,615	-		BPHYT_RS15355	0.62	+0.7
3,487,690	+		BPHYT_RS15355	0.81	-1.6
3,487,691	-		BPHYT_RS15355	0.81	-0.1
3,487,691	-		BPHYT_RS15355	0.81	+0.9
3,487,691	-		BPHYT_RS15355	0.81	+0.4
3,487,770	+				+0.4
3,487,771	-				+0.2
3,487,771	-				-0.9
3,487,870	+				+1.7
3,487,871	-				-2.1
3,487,871	-				-0.1
3,487,871	-				-0.0
3,488,068	+		BPHYT_RS15360	0.54	+0.2
3,488,069	-		BPHYT_RS15360	0.54	+0.2
3,488,069	-		BPHYT_RS15360	0.54	-0.2
3,488,083	+		BPHYT_RS15360	0.60	+0.5
3,488,207	+				-0.2
3,488,207	+				-0.0
3,488,207	+				+1.3
3,488,208	-				-1.1
3,488,208	-				-0.8
3,488,332	+				+0.8
3,488,332	+				-0.2
3,488,333	-				+0.3
3,488,340	-				+1.1
3,488,355	+				+0.1
3,488,355	+				-0.9
3,488,356	-				+0.7