Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15085

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
3,431,600	+		BPHYT_RS15080	0.52	+0.5
3,431,601	-		BPHYT_RS15080	0.52	-0.8
3,431,601	-		BPHYT_RS15080	0.52	-1.3
3,431,601	-		BPHYT_RS15080	0.52	-1.0
3,431,687	+		BPHYT_RS15080	0.57	-0.3
3,431,688	-		BPHYT_RS15080	0.57	+0.2
3,431,688	-		BPHYT_RS15080	0.57	+0.1
3,432,203	+		BPHYT_RS15080	0.89	-1.0
3,432,502	+				+0.3
3,432,503	-				-0.3
3,432,621	-				-0.8
3,432,715	+		BPHYT_RS15085	0.14	+1.0
3,432,716	-		BPHYT_RS15085	0.14	-0.6
3,432,971	-		BPHYT_RS15085	0.25	-0.1
3,432,971	-		BPHYT_RS15085	0.25	-2.0
3,432,991	+		BPHYT_RS15085	0.25	-1.2
3,433,074	+		BPHYT_RS15085	0.29	-2.0
3,433,075	-		BPHYT_RS15085	0.29	-1.3
3,433,075	-		BPHYT_RS15085	0.29	-0.7
3,433,100	+		BPHYT_RS15085	0.30	-0.9
3,433,100	+		BPHYT_RS15085	0.30	+0.3
3,433,100	+		BPHYT_RS15085	0.30	-2.3
3,433,100	+		BPHYT_RS15085	0.30	-1.2
3,433,101	-		BPHYT_RS15085	0.30	-0.6
3,433,101	-		BPHYT_RS15085	0.30	-0.5
3,433,270	+		BPHYT_RS15085	0.37	+0.5
3,433,271	-		BPHYT_RS15085	0.37	-0.4
3,433,276	+		BPHYT_RS15085	0.37	-2.2
3,433,305	+		BPHYT_RS15085	0.38	-0.5
3,433,406	-		BPHYT_RS15085	0.43	-0.1
3,433,406	-		BPHYT_RS15085	0.43	-2.2
3,433,408	+		BPHYT_RS15085	0.43	-0.6
3,433,409	-		BPHYT_RS15085	0.43	-1.7
3,433,409	-		BPHYT_RS15085	0.43	-0.4
3,433,521	-		BPHYT_RS15085	0.47	-0.4
3,433,521	-		BPHYT_RS15085	0.47	+0.2
3,433,521	-		BPHYT_RS15085	0.47	-1.6
3,433,576	+		BPHYT_RS15085	0.50	-1.1
3,433,577	-		BPHYT_RS15085	0.50	-1.3
3,433,579	+		BPHYT_RS15085	0.50	+1.2
3,433,817	-		BPHYT_RS15085	0.60	-1.1
3,434,258	-		BPHYT_RS15085	0.78	-0.5
3,434,482	+		BPHYT_RS15085	0.87	+1.5
3,434,866	+				+0.8
3,434,867	-				-0.7
3,434,867	-				+0.8
3,434,867	-				-1.1
3,435,255	+		BPHYT_RS15090	0.37	-1.5
3,435,260	+		BPHYT_RS15090	0.37	+0.2
3,435,594	+		BPHYT_RS15090	0.70	-0.1
3,435,598	+		BPHYT_RS15090	0.71	-0.9
3,435,598	+		BPHYT_RS15090	0.71	-0.3
3,435,599	-		BPHYT_RS15090	0.71	-2.9
3,435,599	-		BPHYT_RS15090	0.71	-2.4
3,435,599	-		BPHYT_RS15090	0.71	+1.0