Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12185

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
2,781,766	+		BPHYT_RS12180	0.70	+0.4
2,781,767	-		BPHYT_RS12180	0.70	+1.0
2,781,813	+		BPHYT_RS12180	0.74	-0.5
2,781,813	+		BPHYT_RS12180	0.74	-0.1
2,781,814	-		BPHYT_RS12180	0.74	+0.0
2,781,991	+				-0.6
2,782,374	+				-1.0
2,782,374	+				-2.2
2,782,374	+				-1.6
2,782,493	+				-0.2
2,782,494	-				-0.6
2,782,494	-				+0.7
2,782,591	+				-1.5
2,782,592	-				+0.5
2,782,619	+				-0.4
2,782,620	-				-0.5
2,782,620	-				+0.1
2,782,620	-				-0.8
2,782,620	-				-1.3
2,782,620	-				+0.8
2,782,621	+				-0.3
2,782,622	-				-0.9
2,782,622	-				-0.4
2,782,842	+				+0.0
2,782,842	+				-0.0
2,782,994	-		BPHYT_RS12185	0.20	+0.6
2,782,994	-		BPHYT_RS12185	0.20	-0.4
2,783,121	-		BPHYT_RS12185	0.30	-0.9
2,783,121	-		BPHYT_RS12185	0.30	+1.3
2,783,121	-		BPHYT_RS12185	0.30	-0.7
2,783,140	+		BPHYT_RS12185	0.32	-0.0
2,783,150	-		BPHYT_RS12185	0.33	+1.4
2,783,185	+		BPHYT_RS12185	0.36	+2.2
2,783,185	+		BPHYT_RS12185	0.36	+4.4
2,783,196	+		BPHYT_RS12185	0.37	+0.4
2,783,196	+		BPHYT_RS12185	0.37	-0.0
2,783,272	+		BPHYT_RS12185	0.43	+0.7
2,783,272	+		BPHYT_RS12185	0.43	-1.3
2,783,273	-		BPHYT_RS12185	0.43	+0.4
2,783,273	-		BPHYT_RS12185	0.43	+1.1
2,783,273	-		BPHYT_RS12185	0.43	+0.4
2,783,273	-		BPHYT_RS12185	0.43	-0.3
2,783,273	-		BPHYT_RS12185	0.43	+1.4
2,783,273	-		BPHYT_RS12185	0.43	-0.6
2,783,565	-		BPHYT_RS12185	0.67	-0.2
2,783,565	-		BPHYT_RS12185	0.67	-1.8
2,783,565	-		BPHYT_RS12185	0.67	+0.2
2,783,575	+		BPHYT_RS12185	0.68	+1.4
2,783,576	-		BPHYT_RS12185	0.68	-2.8
2,783,576	-		BPHYT_RS12185	0.68	-0.3
2,783,740	+		BPHYT_RS12185	0.81	+0.6
2,783,740	+		BPHYT_RS12185	0.81	-1.6
2,783,811	+		BPHYT_RS12185	0.87	-0.0
2,783,811	+		BPHYT_RS12185	0.87	+2.6
2,784,037	+				+0.6