Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09640

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
2,184,791	+				+1.3
2,184,803	+				+0.5
2,184,818	+				+1.0
2,184,892	-		BPHYT_RS09635	0.11	-1.1
2,184,892	-		BPHYT_RS09635	0.11	-0.2
2,185,062	+		BPHYT_RS09635	0.43	+0.7
2,185,104	+		BPHYT_RS09635	0.51	+1.9
2,185,104	+		BPHYT_RS09635	0.51	+0.4
2,185,105	-		BPHYT_RS09635	0.52	+2.0
2,185,105	-		BPHYT_RS09635	0.52	-0.4
2,185,377	+				+2.4
2,185,378	-				-0.5
2,185,416	+				+0.8
2,185,416	+				+0.7
2,185,417	-				+0.2
2,185,550	-		BPHYT_RS09640	0.20	-2.6
2,185,561	+		BPHYT_RS09640	0.21	-0.5
2,185,561	+		BPHYT_RS09640	0.21	+1.8
2,185,678	+		BPHYT_RS09640	0.36	+2.4
2,185,681	+		BPHYT_RS09640	0.36	+1.6
2,185,744	-		BPHYT_RS09640	0.44	-0.2
2,185,744	-		BPHYT_RS09640	0.44	-0.4
2,185,807	-		BPHYT_RS09640	0.52	-0.9
2,185,807	-		BPHYT_RS09640	0.52	+2.0
2,185,853	+		BPHYT_RS09640	0.58	+1.3
2,185,853	+		BPHYT_RS09640	0.58	+1.9
2,185,853	+		BPHYT_RS09640	0.58	+1.1
2,186,062	+		BPHYT_RS09640	0.84	+1.8
2,186,063	-		BPHYT_RS09640	0.85	-0.1
2,186,071	+		BPHYT_RS09640	0.86	+1.7
2,186,071	+		BPHYT_RS09640	0.86	+2.1
2,186,071	+		BPHYT_RS09640	0.86	+1.3
2,186,072	-		BPHYT_RS09640	0.86	-0.4
2,186,706	-		BPHYT_RS09645	0.63	-1.3
2,186,763	-		BPHYT_RS09645	0.71	-2.4
2,186,826	+		BPHYT_RS09645	0.79	+0.9
2,186,827	-		BPHYT_RS09645	0.80	+0.4
2,186,915	+				+2.0
2,186,915	+				+2.0
2,186,915	+				+1.8
2,186,915	+				+1.9
2,186,915	+				+2.6
2,186,916	-				+0.2
2,186,978	+				-0.5
2,187,152	+				+1.4
2,187,157	+				+1.0