Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06985

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
1,577,371	+		BPHYT_RS06975	0.83	+0.0
1,577,372	-		BPHYT_RS06975	0.83	+1.0
1,577,372	-		BPHYT_RS06975	0.83	-0.3
1,577,520	-				+0.6
1,577,585	+				-0.2
1,577,585	+				-0.3
1,577,585	+				+1.3
1,577,585	+				-0.3
1,577,586	-				+0.4
1,577,586	-				-0.8
1,577,587	+				+1.1
1,577,618	-				+0.1
1,577,618	-				+0.8
1,577,697	+				+0.0
1,577,698	-				+1.4
1,577,698	-				+2.0
1,577,824	-		BPHYT_RS06980	0.34	-0.5
1,578,010	-		BPHYT_RS06980	0.72	-1.7
1,578,046	+		BPHYT_RS06980	0.80	-0.3
1,578,046	+		BPHYT_RS06980	0.80	+1.0
1,578,046	+		BPHYT_RS06980	0.80	+0.5
1,578,047	-		BPHYT_RS06980	0.80	-2.1
1,578,047	-		BPHYT_RS06980	0.80	+3.0
1,578,048	+		BPHYT_RS06980	0.80	+0.7
1,578,049	-		BPHYT_RS06980	0.80	+0.2
1,578,070	-		BPHYT_RS06980	0.85	+1.5
1,578,155	+				-0.2
1,578,155	+				-1.6
1,578,328	+				+1.9
1,578,456	+				+2.0
1,578,456	+				+1.9
1,578,456	+				+2.0
1,578,457	-				+1.8
1,578,457	-				+2.4
1,578,525	+		BPHYT_RS06985	0.13	+1.8
1,578,526	-		BPHYT_RS06985	0.13	+1.9
1,578,552	+		BPHYT_RS06985	0.14	+1.9
1,578,553	-		BPHYT_RS06985	0.15	+1.8
1,578,787	+		BPHYT_RS06985	0.30	+2.1
1,579,549	-		BPHYT_RS06985	0.80	+1.7
1,579,749	+				+2.1
1,579,749	+				+2.2
1,579,773	+				+1.8
1,579,788	+				+2.3
1,579,789	-				+1.8
1,579,791	+				+2.2
1,579,791	+				+1.4
1,579,792	-				+2.2
1,579,800	+				+2.1
1,579,801	-				+1.6
1,579,859	+				+1.5
1,579,859	+				+1.4
1,579,860	-				+0.6
1,579,860	-				+0.5
1,579,860	-				+0.7
1,580,081	+		BPHYT_RS06990	0.30	+0.0
1,580,395	+		BPHYT_RS06990	0.85	-1.3
1,580,425	+				-2.3
1,580,564	-				-0.3
1,580,613	+				-0.3
1,580,711	-				-0.1
1,580,711	-				+0.7