Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06765

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
1,530,136	+		BPHYT_RS06760	0.51	+1.0
1,530,136	+		BPHYT_RS06760	0.51	-0.9
1,530,149	-		BPHYT_RS06760	0.52	-0.1
1,530,299	+		BPHYT_RS06760	0.61	-1.6
1,530,300	-		BPHYT_RS06760	0.61	-0.5
1,530,300	-		BPHYT_RS06760	0.61	+0.4
1,530,341	+		BPHYT_RS06760	0.64	+1.0
1,530,539	+		BPHYT_RS06760	0.77	-0.3
1,530,539	+		BPHYT_RS06760	0.77	+0.9
1,530,539	+		BPHYT_RS06760	0.77	+0.8
1,530,539	+		BPHYT_RS06760	0.77	+2.5
1,530,679	-		BPHYT_RS06760	0.86	-0.1
1,530,679	-		BPHYT_RS06760	0.86	-0.5
1,530,796	+				-1.3
1,530,928	-				-0.7
1,530,928	-				-0.6
1,531,007	-				+0.1
1,531,007	-				+0.2
1,531,007	-				+0.7
1,531,068	+				+0.2
1,531,068	+				-0.2
1,531,069	-				-0.2
1,531,069	-				+0.6
1,531,233	+		BPHYT_RS06765	0.31	+1.0
1,531,354	-		BPHYT_RS06765	0.50	-1.2
1,531,465	-		BPHYT_RS06765	0.67	+0.4
1,531,506	+		BPHYT_RS06765	0.73	-1.8
1,531,506	+		BPHYT_RS06765	0.73	-1.1
1,531,507	-		BPHYT_RS06765	0.73	-0.2
1,531,507	-		BPHYT_RS06765	0.73	-1.4
1,531,548	+		BPHYT_RS06765	0.80	+0.6
1,531,549	-		BPHYT_RS06765	0.80	-0.2
1,531,549	-				+1.0
1,531,593	+		BPHYT_RS06765	0.87	+0.2
1,531,593	+		BPHYT_RS06765	0.87	-0.4
1,531,594	-		BPHYT_RS06765	0.87	+0.0
1,531,653	+				-0.8
1,531,653	+				-0.3
1,531,653	+				-0.7
1,531,653	+				-0.2
1,531,654	-				-0.0
1,531,654	-				+0.8
1,531,655	+				-1.6
1,531,656	-				+1.5
1,531,787	+				-0.2
1,531,788	-				-1.3
1,531,880	+				+0.4
1,531,881	-				-1.8
1,531,970	+		BPHYT_RS06770	0.16	+0.1
1,531,989	-		BPHYT_RS06770	0.17	+0.1
1,532,063	+		BPHYT_RS06770	0.24	-0.8
1,532,064	-		BPHYT_RS06770	0.24	-2.1
1,532,085	-		BPHYT_RS06770	0.25	-1.8
1,532,105	+		BPHYT_RS06770	0.27	+1.8
1,532,105	+		BPHYT_RS06770	0.27	+0.0
1,532,106	-		BPHYT_RS06770	0.27	+0.3
1,532,201	-		BPHYT_RS06770	0.35	+0.6
1,532,201	-		BPHYT_RS06770	0.35	-0.0
1,532,204	+		BPHYT_RS06770	0.36	+0.4
1,532,204	+		BPHYT_RS06770	0.36	+0.5
1,532,224	+		BPHYT_RS06770	0.37	-0.2
1,532,231	+		BPHYT_RS06770	0.38	-0.0
1,532,231	+		BPHYT_RS06770	0.38	-1.0
1,532,231	+		BPHYT_RS06770	0.38	-0.5
1,532,232	-		BPHYT_RS06770	0.38	+0.0
1,532,316	-		BPHYT_RS06770	0.45	-1.2
1,532,316	-		BPHYT_RS06770	0.45	-0.5
1,532,330	+		BPHYT_RS06770	0.46	+0.0
1,532,330	+		BPHYT_RS06770	0.46	-1.6
1,532,561	+		BPHYT_RS06770	0.66	-0.8
1,532,571	-		BPHYT_RS06770	0.67	+0.3
1,532,584	+		BPHYT_RS06770	0.68	-0.3
1,532,584	+		BPHYT_RS06770	0.68	+0.4
1,532,584	+		BPHYT_RS06770	0.68	+3.0
1,532,584	+		BPHYT_RS06770	0.68	-0.1
1,532,674	-		BPHYT_RS06770	0.76	+0.4