Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06375

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
1,451,058	+		BPHYT_RS06370	0.60	+0.1
1,451,078	+		BPHYT_RS06370	0.62	+0.5
1,451,079	-		BPHYT_RS06370	0.62	+0.2
1,451,129	+		BPHYT_RS06370	0.67	+0.6
1,451,203	+		BPHYT_RS06370	0.75	+0.0
1,451,527	+				-1.0
1,451,615	-				+0.1
1,451,615	-				+0.2
1,451,615	-				-0.0
1,451,637	-				+0.2
1,451,637	-				+0.8
1,451,790	-				+0.2
1,451,790	-				-0.7
1,451,914	+				+0.5
1,451,916	+				+0.0
1,451,917	-				-1.9
1,451,995	+				+2.4
1,452,000	+				+0.0
1,452,052	+				+0.0
1,452,187	-		BPHYT_RS06375	0.14	+1.0
1,452,416	-		BPHYT_RS06375	0.30	+1.0
1,452,523	-		BPHYT_RS06375	0.37	+0.9
1,452,580	-		BPHYT_RS06375	0.41	-0.8
1,452,672	+		BPHYT_RS06375	0.47	+0.0
1,452,672	+		BPHYT_RS06375	0.47	+3.0
1,452,673	-		BPHYT_RS06375	0.47	-1.0
1,452,736	-		BPHYT_RS06375	0.51	+1.8
1,452,822	+		BPHYT_RS06375	0.57	+1.3
1,452,948	+		BPHYT_RS06375	0.66	+2.3
1,453,461	+				+0.3
1,453,522	+				-0.0
1,453,531	-		BPHYT_RS06380	0.11	+0.3
1,453,531	-		BPHYT_RS06380	0.11	-0.6
1,453,543	+		BPHYT_RS06380	0.13	+1.4
1,453,543	+		BPHYT_RS06380	0.13	+0.2
1,453,581	+		BPHYT_RS06380	0.19	+1.0
1,453,825	+		BPHYT_RS06380	0.58	-0.4
1,453,918	-		BPHYT_RS06380	0.73	-0.4
1,454,053	-				+0.3
1,454,218	+				-0.7
1,454,274	-				+1.0
1,454,313	+				-0.2
1,454,313	+				-1.1
1,454,314	-				-0.8