Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03445

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03435 and BPHYT_RS03440 are separated by 68 nucleotidesBPHYT_RS03440 and BPHYT_RS03445 are separated by 8 nucleotidesBPHYT_RS03445 and BPHYT_RS03450 are separated by 409 nucleotides BPHYT_RS03435: BPHYT_RS03435 - polyisoprenoid-binding protein, at 775,621 to 776,190 _RS03435 BPHYT_RS03440: BPHYT_RS03440 - polyisoprenoid-binding protein, at 776,259 to 776,822 _RS03440 BPHYT_RS03445: BPHYT_RS03445 - cytochrome B561, at 776,831 to 777,391 _RS03445 BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586 _RS03450 Position (kb) 776 777 778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 775.869 kb on + strand, within BPHYT_RS03435at 775.881 kb on + strand, within BPHYT_RS03435at 775.882 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 776.100 kb on - strand, within BPHYT_RS03435at 776.124 kb on - strand, within BPHYT_RS03435at 776.124 kb on - strand, within BPHYT_RS03435at 776.124 kb on - strand, within BPHYT_RS03435at 776.570 kb on - strand, within BPHYT_RS03440at 776.570 kb on - strand, within BPHYT_RS03440at 776.591 kb on - strand, within BPHYT_RS03440at 776.591 kb on - strand, within BPHYT_RS03440at 776.801 kb on - strandat 776.806 kb on + strandat 776.934 kb on + strand, within BPHYT_RS03445at 777.022 kb on - strand, within BPHYT_RS03445at 777.022 kb on - strand, within BPHYT_RS03445at 777.051 kb on + strand, within BPHYT_RS03445at 777.051 kb on + strand, within BPHYT_RS03445at 777.057 kb on + strand, within BPHYT_RS03445at 777.090 kb on + strand, within BPHYT_RS03445at 777.090 kb on + strand, within BPHYT_RS03445at 777.241 kb on - strand, within BPHYT_RS03445at 777.346 kb on + strandat 777.346 kb on + strandat 777.346 kb on + strandat 777.355 kb on - strandat 777.355 kb on - strandat 777.409 kb on + strandat 777.410 kb on - strandat 777.410 kb on - strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.478 kb on - strandat 777.478 kb on - strandat 777.501 kb on + strandat 777.521 kb on - strandat 777.521 kb on - strandat 777.521 kb on - strandat 777.521 kb on - strandat 777.545 kb on + strandat 777.642 kb on + strandat 777.642 kb on + strandat 777.642 kb on + strandat 777.643 kb on - strandat 777.725 kb on + strandat 777.728 kb on + strandat 777.728 kb on + strandat 777.728 kb on + strandat 777.728 kb on + strandat 777.729 kb on - strandat 777.729 kb on - strandat 777.729 kb on - strandat 777.739 kb on + strandat 777.753 kb on + strandat 777.754 kb on - strandat 777.754 kb on - strandat 777.839 kb on + strandat 777.909 kb on + strand, within BPHYT_RS03450at 777.910 kb on - strand, within BPHYT_RS03450at 777.911 kb on + strand, within BPHYT_RS03450at 778.147 kb on - strand, within BPHYT_RS03450at 778.147 kb on - strand, within BPHYT_RS03450at 778.147 kb on - strand, within BPHYT_RS03450at 778.147 kb on - strand, within BPHYT_RS03450at 778.174 kb on - strand, within BPHYT_RS03450at 778.247 kb on + strand, within BPHYT_RS03450at 778.248 kb on - strand, within BPHYT_RS03450at 778.273 kb on + strand, within BPHYT_RS03450at 778.274 kb on - strand, within BPHYT_RS03450

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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775,869 + BPHYT_RS03435 0.44 +0.3
775,881 + BPHYT_RS03435 0.46 -1.9
775,882 - BPHYT_RS03435 0.46 -1.5
775,884 - BPHYT_RS03435 0.46 -0.3
775,884 - BPHYT_RS03435 0.46 +1.4
775,884 - BPHYT_RS03435 0.46 +0.0
775,884 - BPHYT_RS03435 0.46 +1.0
775,884 - BPHYT_RS03435 0.46 +0.4
775,884 - BPHYT_RS03435 0.46 -1.3
775,884 - BPHYT_RS03435 0.46 +0.5
776,100 - BPHYT_RS03435 0.84 +0.0
776,124 - BPHYT_RS03435 0.88 -0.0
776,124 - BPHYT_RS03435 0.88 +0.8
776,124 - BPHYT_RS03435 0.88 -0.5
776,570 - BPHYT_RS03440 0.55 -0.7
776,570 - BPHYT_RS03440 0.55 -0.7
776,591 - BPHYT_RS03440 0.59 -0.5
776,591 - BPHYT_RS03440 0.59 -0.0
776,801 - +0.1
776,806 + -1.6
776,934 + BPHYT_RS03445 0.18 -1.1
777,022 - BPHYT_RS03445 0.34 -0.2
777,022 - BPHYT_RS03445 0.34 +0.7
777,051 + BPHYT_RS03445 0.39 -0.1
777,051 + BPHYT_RS03445 0.39 -2.8
777,057 + BPHYT_RS03445 0.40 +0.1
777,090 + BPHYT_RS03445 0.46 -0.2
777,090 + BPHYT_RS03445 0.46 -2.0
777,241 - BPHYT_RS03445 0.73 -0.9
777,346 + -1.0
777,346 + +0.4
777,346 + -1.0
777,355 - +0.8
777,355 - +1.3
777,409 + -1.0
777,410 - +1.5
777,410 - -0.4
777,474 + -0.7
777,474 + -1.2
777,478 - -0.1
777,478 - -0.3
777,501 + +1.0
777,521 - +0.6
777,521 - -0.2
777,521 - +0.6
777,521 - +1.6
777,545 + -0.0
777,642 + +0.4
777,642 + -0.2
777,642 + -0.7
777,643 - +0.1
777,725 + -0.5
777,728 + +0.1
777,728 + -1.2
777,728 + -0.9
777,728 + -1.8
777,729 - +0.4
777,729 - +0.8
777,729 - +0.1
777,739 + -0.7
777,753 + -0.8
777,754 - -2.3
777,754 - +0.9
777,839 + -1.0
777,909 + BPHYT_RS03450 0.14 +0.4
777,910 - BPHYT_RS03450 0.14 -0.0
777,911 + BPHYT_RS03450 0.14 +2.1
778,147 - BPHYT_RS03450 0.44 +1.5
778,147 - BPHYT_RS03450 0.44 -0.8
778,147 - BPHYT_RS03450 0.44 +0.2
778,147 - BPHYT_RS03450 0.44 +2.7
778,174 - BPHYT_RS03450 0.47 -0.7
778,247 + BPHYT_RS03450 0.57 +0.5
778,248 - BPHYT_RS03450 0.57 +1.4
778,273 + BPHYT_RS03450 0.60 -0.8
778,274 - BPHYT_RS03450 0.60 +0.6

Or see this region's nucleotide sequence