Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02520 and BPHYT_RS02525 are separated by 78 nucleotides BPHYT_RS02525 and BPHYT_RS02530 are separated by 173 nucleotides BPHYT_RS02530 and BPHYT_RS02535 are separated by 343 nucleotides
BPHYT_RS02520: BPHYT_RS02520 - Fis family transcriptional regulator, at 572,474 to 573,823
_RS02520
BPHYT_RS02525: BPHYT_RS02525 - membrane protein, at 573,902 to 574,432
_RS02525
BPHYT_RS02530: BPHYT_RS02530 - hypothetical protein, at 574,606 to 575,319
_RS02530
BPHYT_RS02535: BPHYT_RS02535 - magnesium chelatase subunit ChlI, at 575,663 to 577,261
_RS02535
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 573.770 kb on + strand at 573.963 kb on - strand, within BPHYT_RS02525 at 573.963 kb on - strand, within BPHYT_RS02525 at 573.966 kb on + strand, within BPHYT_RS02525 at 573.966 kb on + strand, within BPHYT_RS02525 at 574.095 kb on + strand, within BPHYT_RS02525 at 574.096 kb on - strand, within BPHYT_RS02525 at 574.096 kb on - strand, within BPHYT_RS02525 at 574.107 kb on + strand at 574.107 kb on + strand, within BPHYT_RS02525 at 574.107 kb on + strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.123 kb on - strand, within BPHYT_RS02525 at 574.171 kb on + strand, within BPHYT_RS02525 at 574.173 kb on + strand, within BPHYT_RS02525 at 574.173 kb on + strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.243 kb on - strand, within BPHYT_RS02525 at 574.243 kb on - strand, within BPHYT_RS02525 at 574.338 kb on + strand, within BPHYT_RS02525 at 574.339 kb on - strand, within BPHYT_RS02525 at 574.383 kb on + strand at 574.383 kb on + strand at 574.384 kb on - strand at 574.514 kb on + strand at 574.519 kb on + strand at 574.564 kb on - strand at 574.566 kb on + strand at 574.567 kb on - strand at 574.575 kb on + strand at 574.575 kb on + strand at 574.575 kb on + strand at 574.576 kb on - strand at 574.576 kb on - strand at 574.576 kb on - strand at 574.889 kb on - strand, within BPHYT_RS02530 at 575.100 kb on + strand, within BPHYT_RS02530 at 575.207 kb on - strand, within BPHYT_RS02530 at 575.239 kb on + strand, within BPHYT_RS02530 at 575.239 kb on + strand, within BPHYT_RS02530 at 575.314 kb on + strand at 575.406 kb on + strand at 575.418 kb on + strand at 575.418 kb on + strand at 575.419 kb on - strand at 575.501 kb on + strand at 575.586 kb on + strand at 575.586 kb on + strand at 575.666 kb on + strand at 575.667 kb on - strand at 575.667 kb on - strand at 575.778 kb on + strand at 575.779 kb on - strand at 575.779 kb on - strand at 575.906 kb on + strand, within BPHYT_RS02535 at 576.298 kb on + strand, within BPHYT_RS02535
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 573,770 + -0.1 573,963 - BPHYT_RS02525 0.11 +0.4 573,963 - BPHYT_RS02525 0.11 +1.9 573,966 + BPHYT_RS02525 0.12 +0.6 573,966 + BPHYT_RS02525 0.12 +0.6 574,095 + BPHYT_RS02525 0.36 +3.3 574,096 - BPHYT_RS02525 0.37 +0.8 574,096 - BPHYT_RS02525 0.37 +1.5 574,107 + +2.3 574,107 + BPHYT_RS02525 0.39 +0.8 574,107 + BPHYT_RS02525 0.39 +2.0 574,108 - BPHYT_RS02525 0.39 +0.2 574,108 - BPHYT_RS02525 0.39 +1.7 574,108 - BPHYT_RS02525 0.39 +3.9 574,123 - BPHYT_RS02525 0.42 +2.0 574,171 + BPHYT_RS02525 0.51 +1.4 574,173 + BPHYT_RS02525 0.51 -1.8 574,173 + BPHYT_RS02525 0.51 +0.4 574,174 - BPHYT_RS02525 0.51 -0.5 574,174 - BPHYT_RS02525 0.51 +1.5 574,174 - BPHYT_RS02525 0.51 +1.7 574,243 - BPHYT_RS02525 0.64 +1.1 574,243 - BPHYT_RS02525 0.64 +0.9 574,338 + BPHYT_RS02525 0.82 +1.1 574,339 - BPHYT_RS02525 0.82 +1.1 574,383 + +1.6 574,383 + -1.0 574,384 - +0.1 574,514 + +1.0 574,519 + +0.6 574,564 - +0.7 574,566 + -1.6 574,567 - +0.9 574,575 + +0.1 574,575 + +0.0 574,575 + -0.4 574,576 - +1.0 574,576 - +0.2 574,576 - +0.7 574,889 - BPHYT_RS02530 0.40 +0.5 575,100 + BPHYT_RS02530 0.69 +1.4 575,207 - BPHYT_RS02530 0.84 +1.0 575,239 + BPHYT_RS02530 0.89 +0.5 575,239 + BPHYT_RS02530 0.89 +0.5 575,314 + +1.4 575,406 + +0.2 575,418 + +0.7 575,418 + -0.2 575,419 - +0.7 575,501 + -1.2 575,586 + -0.0 575,586 + -0.8 575,666 + -0.0 575,667 - -0.2 575,667 - -0.2 575,778 + -0.3 575,779 - +0.3 575,779 - -0.3 575,906 + BPHYT_RS02535 0.15 -1.2 576,298 + BPHYT_RS02535 0.40 -0.8
Or see this region's nucleotide sequence