Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02430 and BPHYT_RS02435 are separated by 98 nucleotides BPHYT_RS02435 and BPHYT_RS02440 are separated by 198 nucleotides BPHYT_RS02440 and BPHYT_RS02445 are separated by 13 nucleotides
BPHYT_RS02430: BPHYT_RS02430 - XRE family transcriptional regulator, at 552,604 to 553,572
_RS02430
BPHYT_RS02435: BPHYT_RS02435 - hypothetical protein, at 553,671 to 553,997
_RS02435
BPHYT_RS02440: BPHYT_RS02440 - octanoyltransferase, at 554,196 to 554,921
_RS02440
BPHYT_RS02445: BPHYT_RS02445 - lipoyl synthase, at 554,935 to 555,942
_RS02445
Position (kb) 553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 552.770 kb on + strand, within BPHYT_RS02430 at 552.771 kb on - strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.915 kb on - strand, within BPHYT_RS02430 at 553.182 kb on + strand, within BPHYT_RS02430 at 553.182 kb on + strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430 at 553.627 kb on - strand at 553.826 kb on + strand, within BPHYT_RS02435 at 553.826 kb on + strand, within BPHYT_RS02435 at 553.971 kb on - strand at 553.971 kb on - strand at 553.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 552,770 + BPHYT_RS02430 0.17 -0.8 552,771 - BPHYT_RS02430 0.17 -1.2 552,773 + BPHYT_RS02430 0.17 -0.6 552,773 + BPHYT_RS02430 0.17 -1.1 552,773 + BPHYT_RS02430 0.17 -0.4 552,773 + BPHYT_RS02430 0.17 -0.4 552,774 - BPHYT_RS02430 0.18 -1.0 552,774 - BPHYT_RS02430 0.18 +2.0 552,774 - BPHYT_RS02430 0.18 -1.7 552,774 - BPHYT_RS02430 0.18 +1.1 552,774 - BPHYT_RS02430 0.18 -0.0 552,915 - BPHYT_RS02430 0.32 -0.1 553,182 + BPHYT_RS02430 0.60 +1.0 553,182 + BPHYT_RS02430 0.60 -2.0 553,183 - BPHYT_RS02430 0.60 -1.6 553,183 - BPHYT_RS02430 0.60 -0.2 553,183 - BPHYT_RS02430 0.60 +0.1 553,627 - -0.5 553,826 + BPHYT_RS02435 0.47 +2.1 553,826 + BPHYT_RS02435 0.47 -0.8 553,971 - +0.0 553,971 - -0.3 553,971 - -0.2
Or see this region's nucleotide sequence