Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02415 and BPHYT_RS02420 are separated by 13 nucleotides BPHYT_RS02420 and BPHYT_RS02425 overlap by 29 nucleotides BPHYT_RS02425 and BPHYT_RS02430 are separated by 16 nucleotides
BPHYT_RS02415: BPHYT_RS02415 - cytochrome C550, at 550,138 to 551,367
_RS02415
BPHYT_RS02420: BPHYT_RS02420 - cytochrome C550, at 551,381 to 552,346
_RS02420
BPHYT_RS02425: BPHYT_RS02425 - hypothetical protein, at 552,318 to 552,587
_RS02425
BPHYT_RS02430: BPHYT_RS02430 - XRE family transcriptional regulator, at 552,604 to 553,572
_RS02430
Position (kb) 552
553 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.365 kb on + strand at 551.365 kb on + strand at 551.366 kb on - strand at 551.366 kb on - strand at 551.420 kb on + strand at 551.421 kb on - strand at 551.502 kb on - strand, within BPHYT_RS02420 at 551.520 kb on - strand, within BPHYT_RS02420 at 551.520 kb on - strand, within BPHYT_RS02420 at 551.714 kb on + strand, within BPHYT_RS02420 at 551.716 kb on + strand, within BPHYT_RS02420 at 551.716 kb on + strand, within BPHYT_RS02420 at 551.781 kb on + strand, within BPHYT_RS02420 at 551.782 kb on - strand, within BPHYT_RS02420 at 551.782 kb on - strand, within BPHYT_RS02420 at 551.924 kb on + strand, within BPHYT_RS02420 at 551.925 kb on - strand, within BPHYT_RS02420 at 551.925 kb on - strand, within BPHYT_RS02420 at 552.257 kb on + strand at 552.266 kb on + strand at 552.266 kb on + strand at 552.313 kb on - strand at 552.486 kb on + strand, within BPHYT_RS02425 at 552.486 kb on + strand, within BPHYT_RS02425 at 552.539 kb on + strand, within BPHYT_RS02425 at 552.539 kb on + strand, within BPHYT_RS02425 at 552.539 kb on + strand, within BPHYT_RS02425 at 552.585 kb on + strand at 552.585 kb on + strand at 552.586 kb on - strand at 552.586 kb on - strand at 552.586 kb on - strand at 552.770 kb on + strand, within BPHYT_RS02430 at 552.771 kb on - strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.915 kb on - strand, within BPHYT_RS02430 at 553.182 kb on + strand, within BPHYT_RS02430 at 553.182 kb on + strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 551,365 + -0.4 551,365 + -1.5 551,366 - -1.3 551,366 - -0.1 551,420 + -0.8 551,421 - -2.5 551,502 - BPHYT_RS02420 0.13 -0.5 551,520 - BPHYT_RS02420 0.14 +1.0 551,520 - BPHYT_RS02420 0.14 -0.5 551,714 + BPHYT_RS02420 0.34 -0.5 551,716 + BPHYT_RS02420 0.35 +0.2 551,716 + BPHYT_RS02420 0.35 -0.3 551,781 + BPHYT_RS02420 0.41 -1.1 551,782 - BPHYT_RS02420 0.42 -0.3 551,782 - BPHYT_RS02420 0.42 +0.2 551,924 + BPHYT_RS02420 0.56 -0.5 551,925 - BPHYT_RS02420 0.56 -2.3 551,925 - BPHYT_RS02420 0.56 -1.2 552,257 + +2.0 552,266 + +0.1 552,266 + -0.0 552,313 - -0.3 552,486 + BPHYT_RS02425 0.62 -0.9 552,486 + BPHYT_RS02425 0.62 +0.4 552,539 + BPHYT_RS02425 0.82 -0.6 552,539 + BPHYT_RS02425 0.82 -1.0 552,539 + BPHYT_RS02425 0.82 +2.5 552,585 + -1.3 552,585 + -1.6 552,586 - +1.1 552,586 - -0.0 552,586 - +0.7 552,770 + BPHYT_RS02430 0.17 -0.8 552,771 - BPHYT_RS02430 0.17 -1.2 552,773 + BPHYT_RS02430 0.17 -0.6 552,773 + BPHYT_RS02430 0.17 -1.1 552,773 + BPHYT_RS02430 0.17 -0.4 552,773 + BPHYT_RS02430 0.17 -0.4 552,774 - BPHYT_RS02430 0.18 -1.0 552,774 - BPHYT_RS02430 0.18 +2.0 552,774 - BPHYT_RS02430 0.18 -1.7 552,774 - BPHYT_RS02430 0.18 +1.1 552,774 - BPHYT_RS02430 0.18 -0.0 552,915 - BPHYT_RS02430 0.32 -0.1 553,182 + BPHYT_RS02430 0.60 +1.0 553,182 + BPHYT_RS02430 0.60 -2.0 553,183 - BPHYT_RS02430 0.60 -1.6 553,183 - BPHYT_RS02430 0.60 -0.2 553,183 - BPHYT_RS02430 0.60 +0.1
Or see this region's nucleotide sequence