Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00915 and BPHYT_RS00920 are separated by 559 nucleotides BPHYT_RS00920 and BPHYT_RS00925 overlap by 4 nucleotides BPHYT_RS00925 and BPHYT_RS00930 are separated by 84 nucleotides
BPHYT_RS00915: BPHYT_RS00915 - IclR family transcriptional regulator, at 209,766 to 210,644
_RS00915
BPHYT_RS00920: BPHYT_RS00920 - transposase, at 211,204 to 212,040
_RS00920
BPHYT_RS00925: BPHYT_RS00925 - transposase, at 212,037 to 212,660
_RS00925
BPHYT_RS00930: BPHYT_RS00930 - ATP-binding protein, at 212,745 to 213,533
_RS00930
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 210.273 kb on + strand, within BPHYT_RS00915 at 210.473 kb on + strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.477 kb on + strand, within BPHYT_RS00915 at 210.477 kb on + strand, within BPHYT_RS00915 at 210.478 kb on - strand, within BPHYT_RS00915 at 210.920 kb on + strand at 211.197 kb on - strand at 211.205 kb on + strand at 211.205 kb on + strand at 211.206 kb on - strand at 211.464 kb on - strand, within BPHYT_RS00920 at 211.521 kb on - strand, within BPHYT_RS00920 at 211.550 kb on + strand, within BPHYT_RS00920 at 211.551 kb on - strand, within BPHYT_RS00920 at 212.046 kb on + strand at 212.075 kb on - strand at 212.185 kb on + strand, within BPHYT_RS00925 at 212.185 kb on + strand, within BPHYT_RS00925 at 212.185 kb on + strand, within BPHYT_RS00925 at 212.186 kb on - strand, within BPHYT_RS00925 at 212.186 kb on - strand, within BPHYT_RS00925 at 212.376 kb on - strand, within BPHYT_RS00925 at 212.387 kb on - strand, within BPHYT_RS00925 at 212.396 kb on + strand, within BPHYT_RS00925 at 212.512 kb on + strand, within BPHYT_RS00925 at 212.551 kb on + strand, within BPHYT_RS00925 at 212.552 kb on - strand, within BPHYT_RS00925 at 212.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 210,273 + BPHYT_RS00915 0.58 -0.3 210,473 + BPHYT_RS00915 0.80 +0.2 210,474 - BPHYT_RS00915 0.81 -1.5 210,474 - BPHYT_RS00915 0.81 +0.1 210,474 - BPHYT_RS00915 0.81 +1.4 210,474 - BPHYT_RS00915 0.81 +0.7 210,474 - BPHYT_RS00915 0.81 -0.7 210,477 + BPHYT_RS00915 0.81 +0.1 210,477 + BPHYT_RS00915 0.81 -0.4 210,478 - BPHYT_RS00915 0.81 -2.0 210,920 + +0.8 211,197 - -1.0 211,205 + -2.4 211,205 + +0.7 211,206 - -0.4 211,464 - BPHYT_RS00920 0.31 -0.4 211,521 - BPHYT_RS00920 0.38 +0.9 211,550 + BPHYT_RS00920 0.41 +1.4 211,551 - BPHYT_RS00920 0.41 +1.7 212,046 + +0.0 212,075 - -1.1 212,185 + BPHYT_RS00925 0.24 -0.0 212,185 + BPHYT_RS00925 0.24 +0.2 212,185 + BPHYT_RS00925 0.24 +0.0 212,186 - BPHYT_RS00925 0.24 +0.8 212,186 - BPHYT_RS00925 0.24 -1.8 212,376 - BPHYT_RS00925 0.54 -0.6 212,387 - BPHYT_RS00925 0.56 +0.3 212,396 + BPHYT_RS00925 0.58 +3.3 212,512 + BPHYT_RS00925 0.76 +0.1 212,551 + BPHYT_RS00925 0.82 +0.0 212,552 - BPHYT_RS00925 0.83 -0.4 212,648 - -0.3
Or see this region's nucleotide sequence