Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35770

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35765 and BPHYT_RS35770 are separated by 103 nucleotidesBPHYT_RS35770 and BPHYT_RS35775 overlap by 4 nucleotides BPHYT_RS35765: BPHYT_RS35765 - ABC transporter permease, at 3,613,220 to 3,615,106 _RS35765 BPHYT_RS35770: BPHYT_RS35770 - glyoxalase, at 3,615,210 to 3,615,749 _RS35770 BPHYT_RS35775: BPHYT_RS35775 - ribulose bisphosphate carboxylase, at 3,615,746 to 3,617,044 _RS35775 Position (kb) 3615 3616Strain fitness (log2 ratio) -1 0 1at 3614.580 kb on - strand, within BPHYT_RS35765at 3614.681 kb on - strand, within BPHYT_RS35765at 3615.375 kb on - strand, within BPHYT_RS35770at 3615.682 kb on - strand, within BPHYT_RS35770at 3616.585 kb on - strand, within BPHYT_RS35775

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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3,614,580 - BPHYT_RS35765 0.72 +0.3
3,614,681 - BPHYT_RS35765 0.77 -0.8
3,615,375 - BPHYT_RS35770 0.31 +1.1
3,615,682 - BPHYT_RS35770 0.87 +1.7
3,616,585 - BPHYT_RS35775 0.65 +1.3

Or see this region's nucleotide sequence