Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31250 and BPHYT_RS31255 are separated by 150 nucleotides BPHYT_RS31255 and BPHYT_RS31260 are separated by 206 nucleotides BPHYT_RS31260 and BPHYT_RS31265 are separated by 363 nucleotides BPHYT_RS31265 and BPHYT_RS31270 are separated by 349 nucleotides
BPHYT_RS31250: BPHYT_RS31250 - ABC transporter, at 2,569,723 to 2,570,505
_RS31250
BPHYT_RS31255: BPHYT_RS31255 - cytochrome B561, at 2,570,656 to 2,571,231
_RS31255
BPHYT_RS31260: BPHYT_RS31260 - histidine kinase, at 2,571,438 to 2,572,127
_RS31260
BPHYT_RS31265: BPHYT_RS31265 - hypothetical protein, at 2,572,491 to 2,572,757
_RS31265
BPHYT_RS31270: BPHYT_RS31270 - chromate transporter, at 2,573,107 to 2,574,324
_RS31270
Position (kb)
2571
2572
2573 Strain fitness (log2 ratio)
-1
0
1 at 2570.943 kb on - strand, within BPHYT_RS31255 at 2571.025 kb on + strand at 2571.187 kb on + strand at 2571.334 kb on - strand at 2571.850 kb on - strand, within BPHYT_RS31260 at 2572.130 kb on + strand at 2572.254 kb on + strand at 2572.915 kb on + strand at 2572.916 kb on - strand at 2572.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 2,570,943 - BPHYT_RS31255 0.50 -0.7 2,571,025 + +0.9 2,571,187 + +1.5 2,571,334 - -0.3 2,571,850 - BPHYT_RS31260 0.60 +1.2 2,572,130 + -0.8 2,572,254 + +0.7 2,572,915 + +0.3 2,572,916 - +0.3 2,572,916 - -0.7
Or see this region's nucleotide sequence