Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30520

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30515 and BPHYT_RS30520 are separated by 120 nucleotidesBPHYT_RS30520 and BPHYT_RS30525 are separated by 234 nucleotides BPHYT_RS30515: BPHYT_RS30515 - sorbose dehydrogenase, at 2,405,520 to 2,407,199 _RS30515 BPHYT_RS30520: BPHYT_RS30520 - ABC transporter substrate-binding protein, at 2,407,320 to 2,408,366 _RS30520 BPHYT_RS30525: BPHYT_RS30525 - nitrate ABC transporter substrate-binding protein, at 2,408,601 to 2,409,596 _RS30525 Position (kb) 2407 2408 2409Strain fitness (log2 ratio) -2 -1 0 1 2at 2406.835 kb on + strand, within BPHYT_RS30515at 2407.501 kb on + strand, within BPHYT_RS30520at 2407.502 kb on - strand, within BPHYT_RS30520at 2407.975 kb on + strand, within BPHYT_RS30520at 2408.443 kb on + strandat 2408.444 kb on - strandat 2408.445 kb on + strandat 2408.445 kb on + strandat 2408.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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2,406,835 + BPHYT_RS30515 0.78 -0.5
2,407,501 + BPHYT_RS30520 0.17 -0.0
2,407,502 - BPHYT_RS30520 0.17 +0.4
2,407,975 + BPHYT_RS30520 0.63 -0.3
2,408,443 + +0.5
2,408,444 - +0.5
2,408,445 + +1.8
2,408,445 + -1.0
2,408,504 + -1.8

Or see this region's nucleotide sequence