Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26815
Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO3 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,587,597 | - | -2.5 | |||
1,588,455 | + | BPHYT_RS26815 | 0.17 | -1.3 | |
1,588,753 | - | BPHYT_RS26815 | 0.46 | +0.7 | |
1,588,860 | + | BPHYT_RS26815 | 0.56 | -0.4 | |
1,589,241 | + | -0.8 | |||
1,589,242 | - | -0.3 | |||
1,589,277 | + | +0.6 | |||
1,589,383 | - | +0.1 | |||
1,589,616 | + | BPHYT_RS26820 | 0.36 | -2.9 | |
1,589,679 | + | BPHYT_RS26820 | 0.43 | -0.7 | |
1,590,139 | + | -1.0 | |||
1,590,254 | + | -2.4 | |||
1,590,255 | - | -0.7 |
Or see this region's nucleotide sequence