Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26200

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26190 and BPHYT_RS26195 are separated by 152 nucleotidesBPHYT_RS26195 and BPHYT_RS26200 are separated by 3 nucleotidesBPHYT_RS26200 and BPHYT_RS26205 are separated by 13 nucleotides BPHYT_RS26190: BPHYT_RS26190 - lysine transporter LysE, at 1,447,925 to 1,448,557 _RS26190 BPHYT_RS26195: BPHYT_RS26195 - transporter, at 1,448,710 to 1,448,970 _RS26195 BPHYT_RS26200: BPHYT_RS26200 - acetate kinase, at 1,448,974 to 1,450,134 _RS26200 BPHYT_RS26205: BPHYT_RS26205 - phosphoketolase, at 1,450,148 to 1,452,541 _RS26205 Position (kb) 1448 1449 1450 1451Strain fitness (log2 ratio) -1 0 1 2 3at 1448.166 kb on + strand, within BPHYT_RS26190at 1448.167 kb on - strand, within BPHYT_RS26190at 1448.301 kb on + strand, within BPHYT_RS26190at 1448.478 kb on + strand, within BPHYT_RS26190at 1448.478 kb on + strand, within BPHYT_RS26190at 1448.600 kb on - strandat 1448.686 kb on - strandat 1449.053 kb on - strandat 1449.381 kb on - strand, within BPHYT_RS26200at 1449.591 kb on - strand, within BPHYT_RS26200at 1450.207 kb on - strandat 1450.410 kb on + strand, within BPHYT_RS26205at 1450.852 kb on + strand, within BPHYT_RS26205at 1450.853 kb on - strand, within BPHYT_RS26205at 1450.856 kb on + strand, within BPHYT_RS26205at 1450.874 kb on - strand, within BPHYT_RS26205

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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1,448,166 + BPHYT_RS26190 0.38 -0.5
1,448,167 - BPHYT_RS26190 0.38 -1.3
1,448,301 + BPHYT_RS26190 0.59 +0.5
1,448,478 + BPHYT_RS26190 0.87 -0.2
1,448,478 + BPHYT_RS26190 0.87 +0.5
1,448,600 - -1.1
1,448,686 - +3.4
1,449,053 - +0.7
1,449,381 - BPHYT_RS26200 0.35 -0.2
1,449,591 - BPHYT_RS26200 0.53 -1.1
1,450,207 - -0.4
1,450,410 + BPHYT_RS26205 0.11 +0.0
1,450,852 + BPHYT_RS26205 0.29 +1.3
1,450,853 - BPHYT_RS26205 0.29 +0.4
1,450,856 + BPHYT_RS26205 0.30 +0.4
1,450,874 - BPHYT_RS26205 0.30 -0.0

Or see this region's nucleotide sequence