Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24955

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24945 and BPHYT_RS24950 are separated by 96 nucleotidesBPHYT_RS24950 and BPHYT_RS24955 are separated by 111 nucleotidesBPHYT_RS24955 and BPHYT_RS24960 are separated by 201 nucleotides BPHYT_RS24945: BPHYT_RS24945 - alkylhydroperoxidase, at 1,168,051 to 1,168,443 _RS24945 BPHYT_RS24950: BPHYT_RS24950 - HAD family hydrolase, at 1,168,540 to 1,169,232 _RS24950 BPHYT_RS24955: BPHYT_RS24955 - cytochrome C peroxidase, at 1,169,344 to 1,170,786 _RS24955 BPHYT_RS24960: BPHYT_RS24960 - phospholipase C, at 1,170,988 to 1,172,754 _RS24960 Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1169.663 kb on + strand, within BPHYT_RS24955at 1169.777 kb on + strand, within BPHYT_RS24955at 1169.931 kb on - strand, within BPHYT_RS24955at 1170.641 kb on + strand, within BPHYT_RS24955at 1171.424 kb on + strand, within BPHYT_RS24960at 1171.637 kb on + strand, within BPHYT_RS24960at 1171.743 kb on - strand, within BPHYT_RS24960at 1171.770 kb on - strand, within BPHYT_RS24960

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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1,169,663 + BPHYT_RS24955 0.22 +0.0
1,169,777 + BPHYT_RS24955 0.30 -0.1
1,169,931 - BPHYT_RS24955 0.41 -3.2
1,170,641 + BPHYT_RS24955 0.90 -0.4
1,171,424 + BPHYT_RS24960 0.25 +0.3
1,171,637 + BPHYT_RS24960 0.37 -2.1
1,171,743 - BPHYT_RS24960 0.43 -2.2
1,171,770 - BPHYT_RS24960 0.44 +2.5

Or see this region's nucleotide sequence