Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23980 and BPHYT_RS23985 are separated by 98 nucleotides BPHYT_RS23985 and BPHYT_RS23990 are separated by 405 nucleotides
BPHYT_RS23980: BPHYT_RS23980 - hypothetical protein, at 945,462 to 946,625
_RS23980
BPHYT_RS23985: BPHYT_RS23985 - carbohydrate porin, at 946,724 to 948,247
_RS23985
BPHYT_RS23990: BPHYT_RS23990 - N-hydroxyarylamine O-acetyltransferase, at 948,653 to 949,492
_RS23990
Position (kb) 946
947
948
949 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 946.315 kb on + strand, within BPHYT_RS23980 at 946.316 kb on - strand, within BPHYT_RS23980 at 946.316 kb on - strand, within BPHYT_RS23980 at 946.822 kb on - strand at 946.869 kb on + strand at 946.869 kb on + strand at 946.869 kb on + strand at 947.269 kb on - strand, within BPHYT_RS23985 at 947.286 kb on + strand, within BPHYT_RS23985 at 947.286 kb on + strand, within BPHYT_RS23985 at 947.545 kb on - strand, within BPHYT_RS23985 at 947.595 kb on + strand, within BPHYT_RS23985 at 947.772 kb on - strand, within BPHYT_RS23985 at 947.772 kb on - strand, within BPHYT_RS23985 at 947.941 kb on - strand, within BPHYT_RS23985 at 948.361 kb on - strand at 948.424 kb on - strand at 948.446 kb on + strand at 948.446 kb on + strand at 948.467 kb on - strand at 948.483 kb on - strand at 948.676 kb on + strand at 949.185 kb on - strand, within BPHYT_RS23990
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 946,315 + BPHYT_RS23980 0.73 +0.2 946,316 - BPHYT_RS23980 0.73 +0.4 946,316 - BPHYT_RS23980 0.73 -0.3 946,822 - -1.5 946,869 + +0.1 946,869 + +4.2 946,869 + -0.2 947,269 - BPHYT_RS23985 0.36 +0.4 947,286 + BPHYT_RS23985 0.37 +0.4 947,286 + BPHYT_RS23985 0.37 -1.1 947,545 - BPHYT_RS23985 0.54 -2.1 947,595 + BPHYT_RS23985 0.57 -0.5 947,772 - BPHYT_RS23985 0.69 -1.0 947,772 - BPHYT_RS23985 0.69 -0.1 947,941 - BPHYT_RS23985 0.80 +0.2 948,361 - -0.1 948,424 - -1.6 948,446 + -0.5 948,446 + +0.1 948,467 - -0.1 948,483 - -0.4 948,676 + -0.1 949,185 - BPHYT_RS23990 0.63 -1.3
Or see this region's nucleotide sequence