Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23435

Experiment: 36hr PHYTO3 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23430 and BPHYT_RS23435 are separated by 35 nucleotidesBPHYT_RS23435 and BPHYT_RS23440 are separated by 33 nucleotides BPHYT_RS23430: BPHYT_RS23430 - bifunctional D-altronate/D-mannonate dehydratase, at 824,002 to 825,210 _RS23430 BPHYT_RS23435: BPHYT_RS23435 - MFS transporter, at 825,246 to 826,655 _RS23435 BPHYT_RS23440: BPHYT_RS23440 - alcohol dehydrogenase, at 826,689 to 827,735 _RS23440 Position (kb) 825 826 827Strain fitness (log2 ratio) -2 -1 0 1at 825.020 kb on - strand, within BPHYT_RS23430at 825.238 kb on - strandat 825.889 kb on - strand, within BPHYT_RS23435at 826.047 kb on + strand, within BPHYT_RS23435at 826.816 kb on - strand, within BPHYT_RS23440at 826.819 kb on - strand, within BPHYT_RS23440at 827.046 kb on - strand, within BPHYT_RS23440at 827.586 kb on + strand, within BPHYT_RS23440at 827.587 kb on - strand, within BPHYT_RS23440at 827.587 kb on - strand, within BPHYT_RS23440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
remove
825,020 - BPHYT_RS23430 0.84 +0.5
825,238 - +0.9
825,889 - BPHYT_RS23435 0.46 +0.4
826,047 + BPHYT_RS23435 0.57 -0.2
826,816 - BPHYT_RS23440 0.12 -1.4
826,819 - BPHYT_RS23440 0.12 +0.5
827,046 - BPHYT_RS23440 0.34 -0.5
827,586 + BPHYT_RS23440 0.86 -2.4
827,587 - BPHYT_RS23440 0.86 -0.8
827,587 - BPHYT_RS23440 0.86 +0.0

Or see this region's nucleotide sequence