Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23430

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23425 and BPHYT_RS23430 are separated by 229 nucleotidesBPHYT_RS23430 and BPHYT_RS23435 are separated by 35 nucleotides BPHYT_RS23425: BPHYT_RS23425 - mannitol dehydrogenase, at 822,282 to 823,772 _RS23425 BPHYT_RS23430: BPHYT_RS23430 - bifunctional D-altronate/D-mannonate dehydratase, at 824,002 to 825,210 _RS23430 BPHYT_RS23435: BPHYT_RS23435 - MFS transporter, at 825,246 to 826,655 _RS23435 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1 2at 823.387 kb on - strand, within BPHYT_RS23425at 823.515 kb on - strand, within BPHYT_RS23425at 823.515 kb on - strand, within BPHYT_RS23425at 823.517 kb on - strand, within BPHYT_RS23425at 823.517 kb on - strand, within BPHYT_RS23425at 824.207 kb on - strand, within BPHYT_RS23430at 825.020 kb on - strand, within BPHYT_RS23430at 825.238 kb on - strandat 825.889 kb on - strand, within BPHYT_RS23435at 826.047 kb on + strand, within BPHYT_RS23435

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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823,387 - BPHYT_RS23425 0.74 -0.8
823,515 - BPHYT_RS23425 0.83 -0.4
823,515 - BPHYT_RS23425 0.83 +0.3
823,517 - BPHYT_RS23425 0.83 +2.2
823,517 - BPHYT_RS23425 0.83 -2.6
824,207 - BPHYT_RS23430 0.17 -0.7
825,020 - BPHYT_RS23430 0.84 +0.5
825,238 - +0.9
825,889 - BPHYT_RS23435 0.46 +0.4
826,047 + BPHYT_RS23435 0.57 -0.2

Or see this region's nucleotide sequence