Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23300 and BPHYT_RS23305 are separated by 45 nucleotides BPHYT_RS23305 and BPHYT_RS23310 are separated by 145 nucleotides BPHYT_RS23310 and BPHYT_RS23315 are separated by 82 nucleotides BPHYT_RS23315 and BPHYT_RS23320 are separated by 123 nucleotides
BPHYT_RS23300: BPHYT_RS23300 - IclR family transcriptional regulator, at 790,401 to 791,012
_RS23300
BPHYT_RS23305: BPHYT_RS23305 - hypothetical protein, at 791,058 to 791,600
_RS23305
BPHYT_RS23310: BPHYT_RS23310 - hypothetical protein, at 791,746 to 792,558
_RS23310
BPHYT_RS23315: BPHYT_RS23315 - hypothetical protein, at 792,641 to 793,042
_RS23315
BPHYT_RS23320: BPHYT_RS23320 - hypothetical protein, at 793,166 to 793,630
_RS23320
Position (kb) 791
792
793 Strain fitness (log2 ratio) -2
-1
0
1 at 791.025 kb on + strand at 791.026 kb on - strand at 791.080 kb on + strand at 791.202 kb on - strand, within BPHYT_RS23305 at 791.314 kb on + strand, within BPHYT_RS23305 at 791.314 kb on + strand, within BPHYT_RS23305 at 791.496 kb on - strand, within BPHYT_RS23305 at 791.721 kb on + strand at 791.722 kb on - strand at 791.724 kb on - strand at 791.774 kb on + strand at 791.775 kb on - strand at 791.903 kb on - strand, within BPHYT_RS23310 at 792.082 kb on + strand, within BPHYT_RS23310 at 792.181 kb on + strand, within BPHYT_RS23310 at 792.218 kb on - strand, within BPHYT_RS23310 at 792.590 kb on + strand at 792.613 kb on + strand at 792.897 kb on - strand, within BPHYT_RS23315 at 793.137 kb on + strand at 793.335 kb on + strand, within BPHYT_RS23320 at 793.435 kb on + strand, within BPHYT_RS23320 at 793.470 kb on - strand, within BPHYT_RS23320 at 793.477 kb on - strand, within BPHYT_RS23320 at 793.481 kb on + strand, within BPHYT_RS23320
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 791,025 + +0.7 791,026 - -0.6 791,080 + -1.5 791,202 - BPHYT_RS23305 0.27 -0.3 791,314 + BPHYT_RS23305 0.47 +0.4 791,314 + BPHYT_RS23305 0.47 -0.0 791,496 - BPHYT_RS23305 0.81 +0.8 791,721 + -1.4 791,722 - -0.6 791,724 - -0.1 791,774 + -1.6 791,775 - +1.0 791,903 - BPHYT_RS23310 0.19 +0.2 792,082 + BPHYT_RS23310 0.41 -1.1 792,181 + BPHYT_RS23310 0.54 -0.8 792,218 - BPHYT_RS23310 0.58 +0.1 792,590 + -2.1 792,613 + +0.8 792,897 - BPHYT_RS23315 0.64 -2.4 793,137 + -0.5 793,335 + BPHYT_RS23320 0.36 +1.0 793,435 + BPHYT_RS23320 0.58 +1.6 793,470 - BPHYT_RS23320 0.65 -0.3 793,477 - BPHYT_RS23320 0.67 +0.5 793,481 + BPHYT_RS23320 0.68 -1.4
Or see this region's nucleotide sequence