Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23085

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23080 and BPHYT_RS23085 are separated by 48 nucleotidesBPHYT_RS23085 and BPHYT_RS23090 are separated by 33 nucleotidesBPHYT_RS23090 and BPHYT_RS23095 are separated by 37 nucleotides BPHYT_RS23080: BPHYT_RS23080 - gamma-glutamyltransferase, at 741,256 to 743,040 _RS23080 BPHYT_RS23085: BPHYT_RS23085 - MFS transporter, at 743,089 to 744,501 _RS23085 BPHYT_RS23090: BPHYT_RS23090 - histidine kinase, at 744,535 to 745,089 _RS23090 BPHYT_RS23095: BPHYT_RS23095 - MFS transporter, at 745,127 to 746,359 _RS23095 Position (kb) 743 744 745Strain fitness (log2 ratio) -1 0 1at 742.182 kb on + strand, within BPHYT_RS23080at 743.231 kb on + strand, within BPHYT_RS23085at 743.278 kb on + strand, within BPHYT_RS23085at 743.279 kb on - strand, within BPHYT_RS23085at 743.368 kb on + strand, within BPHYT_RS23085at 743.555 kb on - strand, within BPHYT_RS23085at 743.847 kb on + strand, within BPHYT_RS23085at 743.924 kb on - strand, within BPHYT_RS23085at 744.029 kb on - strand, within BPHYT_RS23085at 744.202 kb on + strand, within BPHYT_RS23085at 744.203 kb on - strand, within BPHYT_RS23085at 744.209 kb on - strand, within BPHYT_RS23085at 744.915 kb on - strand, within BPHYT_RS23090at 745.221 kb on - strandat 745.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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742,182 + BPHYT_RS23080 0.52 +0.6
743,231 + BPHYT_RS23085 0.10 -1.5
743,278 + BPHYT_RS23085 0.13 -1.5
743,279 - BPHYT_RS23085 0.13 -0.2
743,368 + BPHYT_RS23085 0.20 -0.6
743,555 - BPHYT_RS23085 0.33 +0.5
743,847 + BPHYT_RS23085 0.54 +0.7
743,924 - BPHYT_RS23085 0.59 -1.3
744,029 - BPHYT_RS23085 0.67 -0.5
744,202 + BPHYT_RS23085 0.79 -0.1
744,203 - BPHYT_RS23085 0.79 -0.3
744,209 - BPHYT_RS23085 0.79 -0.7
744,915 - BPHYT_RS23090 0.68 -1.0
745,221 - +0.8
745,221 - -0.2

Or see this region's nucleotide sequence