Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22860

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22850 and BPHYT_RS22855 are separated by 210 nucleotidesBPHYT_RS22855 and BPHYT_RS22860 are separated by 126 nucleotidesBPHYT_RS22860 and BPHYT_RS22865 overlap by 4 nucleotides BPHYT_RS22850: BPHYT_RS22850 - thioredoxin, at 685,523 to 686,089 _RS22850 BPHYT_RS22855: BPHYT_RS22855 - aldehyde-activating protein, at 686,300 to 686,671 _RS22855 BPHYT_RS22860: BPHYT_RS22860 - chemotaxis protein CheY, at 686,798 to 687,538 _RS22860 BPHYT_RS22865: BPHYT_RS22865 - ATPase, at 687,535 to 688,860 _RS22865 Position (kb) 686 687 688Strain fitness (log2 ratio) -2 -1 0 1 2 3at 686.152 kb on - strandat 686.152 kb on - strandat 686.557 kb on + strand, within BPHYT_RS22855at 686.612 kb on + strand, within BPHYT_RS22855at 686.613 kb on - strand, within BPHYT_RS22855at 686.615 kb on - strand, within BPHYT_RS22855at 686.817 kb on + strandat 687.407 kb on - strand, within BPHYT_RS22860at 687.782 kb on - strand, within BPHYT_RS22865at 688.219 kb on - strand, within BPHYT_RS22865

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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686,152 - +0.8
686,152 - +0.2
686,557 + BPHYT_RS22855 0.69 -2.2
686,612 + BPHYT_RS22855 0.84 -0.3
686,613 - BPHYT_RS22855 0.84 -0.3
686,615 - BPHYT_RS22855 0.85 -1.3
686,817 + +3.7
687,407 - BPHYT_RS22860 0.82 +0.7
687,782 - BPHYT_RS22865 0.19 -1.4
688,219 - BPHYT_RS22865 0.52 -0.3

Or see this region's nucleotide sequence