Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22310 and BPHYT_RS22315 are separated by 185 nucleotides BPHYT_RS22315 and BPHYT_RS22320 are separated by 140 nucleotides BPHYT_RS22320 and BPHYT_RS22325 are separated by 102 nucleotides
BPHYT_RS22310: BPHYT_RS22310 - hypothetical protein, at 559,951 to 560,271
_RS22310
BPHYT_RS22315: BPHYT_RS22315 - hypothetical protein, at 560,457 to 560,654
_RS22315
BPHYT_RS22320: BPHYT_RS22320 - hypothetical protein, at 560,795 to 561,532
_RS22320
BPHYT_RS22325: BPHYT_RS22325 - histidine kinase, at 561,635 to 563,134
_RS22325
Position (kb) 560
561
562 Strain fitness (log2 ratio) -1
0
1 at 560.277 kb on + strand at 560.278 kb on - strand at 560.297 kb on + strand at 560.345 kb on - strand at 560.399 kb on + strand at 560.748 kb on + strand at 561.161 kb on - strand, within BPHYT_RS22320 at 561.413 kb on - strand, within BPHYT_RS22320 at 561.413 kb on - strand, within BPHYT_RS22320 at 561.440 kb on + strand, within BPHYT_RS22320 at 561.440 kb on + strand, within BPHYT_RS22320 at 561.555 kb on + strand at 561.728 kb on + strand at 562.313 kb on - strand, within BPHYT_RS22325
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 560,277 + +0.3 560,278 - +0.0 560,297 + +0.5 560,345 - -0.1 560,399 + +0.1 560,748 + +1.2 561,161 - BPHYT_RS22320 0.50 -0.2 561,413 - BPHYT_RS22320 0.84 +1.2 561,413 - BPHYT_RS22320 0.84 +0.1 561,440 + BPHYT_RS22320 0.87 +1.3 561,440 + BPHYT_RS22320 0.87 +1.2 561,555 + +0.0 561,728 + +0.9 562,313 - BPHYT_RS22325 0.45 -0.2
Or see this region's nucleotide sequence