Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22210

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22200 and BPHYT_RS22205 are separated by 12 nucleotidesBPHYT_RS22205 and BPHYT_RS22210 overlap by 7 nucleotidesBPHYT_RS22210 and BPHYT_RS22215 overlap by 4 nucleotides BPHYT_RS22200: BPHYT_RS22200 - cardiolipin synthetase, at 538,727 to 539,989 _RS22200 BPHYT_RS22205: BPHYT_RS22205 - hypothetical protein, at 540,002 to 540,958 _RS22205 BPHYT_RS22210: BPHYT_RS22210 - metal ABC transporter substrate-binding protein, at 540,952 to 541,746 _RS22210 BPHYT_RS22215: BPHYT_RS22215 - hypothetical protein, at 541,743 to 542,828 _RS22215 Position (kb) 540 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1at 540.025 kb on - strandat 540.237 kb on - strand, within BPHYT_RS22205at 540.237 kb on - strand, within BPHYT_RS22205at 540.522 kb on + strand, within BPHYT_RS22205at 540.908 kb on - strandat 541.958 kb on - strandat 542.322 kb on + strand, within BPHYT_RS22215at 542.420 kb on - strand, within BPHYT_RS22215at 542.420 kb on - strand, within BPHYT_RS22215

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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540,025 - -0.0
540,237 - BPHYT_RS22205 0.25 -0.6
540,237 - BPHYT_RS22205 0.25 -2.8
540,522 + BPHYT_RS22205 0.54 -1.5
540,908 - -0.0
541,958 - +0.8
542,322 + BPHYT_RS22215 0.53 -0.4
542,420 - BPHYT_RS22215 0.62 -0.7
542,420 - BPHYT_RS22215 0.62 -2.5

Or see this region's nucleotide sequence