Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22010
Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO3 MOI 1 |
---|---|---|---|---|---|
remove | |||||
491,982 | + | BPHYT_RS22000 | 0.66 | -1.0 | |
492,164 | - | +0.6 | |||
492,256 | + | BPHYT_RS22005 | 0.16 | -0.7 | |
492,256 | + | BPHYT_RS22005 | 0.16 | -0.7 | |
492,256 | + | BPHYT_RS22005 | 0.16 | -2.3 | |
492,256 | + | BPHYT_RS22005 | 0.16 | -0.2 | |
492,262 | + | BPHYT_RS22005 | 0.17 | +0.4 | |
492,263 | - | BPHYT_RS22005 | 0.17 | -0.0 | |
492,588 | + | BPHYT_RS22005 | 0.58 | +0.1 | |
493,006 | + | +1.7 | |||
493,470 | + | BPHYT_RS22010 | 0.55 | +0.0 | |
493,549 | + | BPHYT_RS22010 | 0.64 | +0.7 | |
493,550 | - | BPHYT_RS22010 | 0.64 | +0.3 | |
493,569 | + | BPHYT_RS22010 | 0.66 | -1.2 | |
493,630 | + | BPHYT_RS22010 | 0.73 | +0.1 | |
493,634 | - | BPHYT_RS22010 | 0.73 | -0.5 | |
494,307 | - | BPHYT_RS22015 | 0.40 | -0.0 | |
494,325 | + | BPHYT_RS22015 | 0.42 | +0.2 | |
494,590 | - | BPHYT_RS22015 | 0.66 | +0.6 |
Or see this region's nucleotide sequence