Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21990

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21985 and BPHYT_RS21990 are separated by 32 nucleotidesBPHYT_RS21990 and BPHYT_RS21995 overlap by 8 nucleotides BPHYT_RS21985: BPHYT_RS21985 - spermidine/putrescine ABC transporter substrate-binding protein, at 488,114 to 489,160 _RS21985 BPHYT_RS21990: BPHYT_RS21990 - FAD-dependent oxidoreductase, at 489,193 to 490,320 _RS21990 BPHYT_RS21995: BPHYT_RS21995 - (2Fe-2S)-binding protein, at 490,313 to 491,746 _RS21995 Position (kb) 489 490 491Strain fitness (log2 ratio) -2 -1 0 1 2 3at 489.072 kb on + strandat 489.123 kb on - strandat 489.123 kb on - strandat 489.182 kb on + strandat 489.195 kb on - strandat 489.363 kb on + strandat 489.423 kb on + strand, within BPHYT_RS21990at 489.593 kb on + strand, within BPHYT_RS21990at 489.653 kb on + strand, within BPHYT_RS21990at 489.686 kb on + strand, within BPHYT_RS21990at 490.571 kb on - strand, within BPHYT_RS21995at 491.119 kb on - strand, within BPHYT_RS21995at 491.202 kb on - strand, within BPHYT_RS21995at 491.232 kb on + strand, within BPHYT_RS21995at 491.252 kb on + strand, within BPHYT_RS21995

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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489,072 + -0.2
489,123 - -0.3
489,123 - -0.3
489,182 + -1.0
489,195 - -0.8
489,363 + +2.4
489,423 + BPHYT_RS21990 0.20 -2.2
489,593 + BPHYT_RS21990 0.35 +1.8
489,653 + BPHYT_RS21990 0.41 -0.7
489,686 + BPHYT_RS21990 0.44 +0.7
490,571 - BPHYT_RS21995 0.18 +1.4
491,119 - BPHYT_RS21995 0.56 +0.4
491,202 - BPHYT_RS21995 0.62 +2.9
491,232 + BPHYT_RS21995 0.64 +0.8
491,252 + BPHYT_RS21995 0.65 -0.9

Or see this region's nucleotide sequence