Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21950

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21945 and BPHYT_RS21950 are separated by 10 nucleotidesBPHYT_RS21950 and BPHYT_RS21955 are separated by 70 nucleotides BPHYT_RS21945: BPHYT_RS21945 - DSBA oxidoreductase, at 479,391 to 480,962 _RS21945 BPHYT_RS21950: BPHYT_RS21950 - RND transporter, at 480,973 to 482,406 _RS21950 BPHYT_RS21955: BPHYT_RS21955 - acetyl-CoA acetyltransferase, at 482,477 to 483,664 _RS21955 Position (kb) 480 481 482 483Strain fitness (log2 ratio) -2 -1 0 1at 480.029 kb on + strand, within BPHYT_RS21945at 480.451 kb on - strand, within BPHYT_RS21945at 480.456 kb on + strand, within BPHYT_RS21945at 481.952 kb on - strand, within BPHYT_RS21950at 482.225 kb on - strand, within BPHYT_RS21950at 482.341 kb on + strandat 482.497 kb on - strandat 482.852 kb on + strand, within BPHYT_RS21955at 483.318 kb on - strand, within BPHYT_RS21955

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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480,029 + BPHYT_RS21945 0.41 +0.1
480,451 - BPHYT_RS21945 0.67 -1.9
480,456 + BPHYT_RS21945 0.68 +0.3
481,952 - BPHYT_RS21950 0.68 +1.2
482,225 - BPHYT_RS21950 0.87 +0.2
482,341 + -1.4
482,497 - -0.1
482,852 + BPHYT_RS21955 0.32 -0.4
483,318 - BPHYT_RS21955 0.71 +1.0

Or see this region's nucleotide sequence