Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21370

Experiment: 36hr PHYTO3 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS21365 and BPHYT_RS21370 are separated by 291 nucleotidesBPHYT_RS21370 and BPHYT_RS21375 are separated by 156 nucleotides BPHYT_RS21365: BPHYT_RS21365 - serine protease, at 352,770 to 353,813 _RS21365 BPHYT_RS21370: BPHYT_RS21370 - glyoxalase, at 354,105 to 354,503 _RS21370 BPHYT_RS21375: BPHYT_RS21375 - hypothetical protein, at 354,660 to 355,586 _RS21375 Position (kb) 354 355Strain fitness (log2 ratio) -1 0 1 2at 353.172 kb on - strand, within BPHYT_RS21365at 353.261 kb on - strand, within BPHYT_RS21365at 353.310 kb on + strand, within BPHYT_RS21365at 353.311 kb on - strand, within BPHYT_RS21365at 353.311 kb on - strand, within BPHYT_RS21365at 353.514 kb on - strand, within BPHYT_RS21365at 353.544 kb on - strand, within BPHYT_RS21365at 353.558 kb on - strand, within BPHYT_RS21365at 354.048 kb on - strandat 354.351 kb on + strand, within BPHYT_RS21370at 354.352 kb on - strand, within BPHYT_RS21370at 354.401 kb on - strand, within BPHYT_RS21370at 354.445 kb on - strand, within BPHYT_RS21370at 355.041 kb on + strand, within BPHYT_RS21375at 355.108 kb on - strand, within BPHYT_RS21375at 355.230 kb on + strand, within BPHYT_RS21375at 355.230 kb on + strand, within BPHYT_RS21375at 355.350 kb on + strand, within BPHYT_RS21375at 355.351 kb on - strand, within BPHYT_RS21375at 355.352 kb on + strand, within BPHYT_RS21375at 355.353 kb on - strand, within BPHYT_RS21375at 355.388 kb on + strand, within BPHYT_RS21375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
remove
353,172 - BPHYT_RS21365 0.39 +0.5
353,261 - BPHYT_RS21365 0.47 +2.5
353,310 + BPHYT_RS21365 0.52 -0.4
353,311 - BPHYT_RS21365 0.52 +0.7
353,311 - BPHYT_RS21365 0.52 -0.6
353,514 - BPHYT_RS21365 0.71 +0.5
353,544 - BPHYT_RS21365 0.74 -0.8
353,558 - BPHYT_RS21365 0.75 +1.2
354,048 - -0.2
354,351 + BPHYT_RS21370 0.62 -0.4
354,352 - BPHYT_RS21370 0.62 +0.5
354,401 - BPHYT_RS21370 0.74 -1.7
354,445 - BPHYT_RS21370 0.85 -0.7
355,041 + BPHYT_RS21375 0.41 +0.2
355,108 - BPHYT_RS21375 0.48 -1.7
355,230 + BPHYT_RS21375 0.61 -0.6
355,230 + BPHYT_RS21375 0.61 +0.3
355,350 + BPHYT_RS21375 0.74 -1.0
355,351 - BPHYT_RS21375 0.75 -0.1
355,352 + BPHYT_RS21375 0.75 -0.3
355,353 - BPHYT_RS21375 0.75 -0.8
355,388 + BPHYT_RS21375 0.79 -0.1

Or see this region's nucleotide sequence