Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19570

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
4,401,201	+		BPHYT_RS19565	0.31	+3.5
4,401,202	-		BPHYT_RS19565	0.31	+3.7
4,401,202	-				+3.0
4,401,202	-		BPHYT_RS19565	0.31	+2.9
4,401,348	+		BPHYT_RS19565	0.44	+3.6
4,401,349	-		BPHYT_RS19565	0.45	+3.4
4,401,522	+		BPHYT_RS19565	0.60	+3.4
4,401,523	-		BPHYT_RS19565	0.60	+3.1
4,401,523	-		BPHYT_RS19565	0.60	+2.9
4,401,523	-		BPHYT_RS19565	0.60	+3.4
4,401,523	-		BPHYT_RS19565	0.60	+3.3
4,401,553	+		BPHYT_RS19565	0.63	+3.3
4,401,600	+		BPHYT_RS19565	0.67	+0.2
4,401,600	+		BPHYT_RS19565	0.67	+4.1
4,401,600	+		BPHYT_RS19565	0.67	+3.3
4,401,600	+		BPHYT_RS19565	0.67	+2.7
4,401,601	-		BPHYT_RS19565	0.67	+3.0
4,401,601	-		BPHYT_RS19565	0.67	+2.9
4,401,601	-		BPHYT_RS19565	0.67	+2.9
4,401,601	-		BPHYT_RS19565	0.67	+3.4
4,401,885	+				+3.4
4,401,885	+				+2.7
4,401,885	+				+1.1
4,401,885	+				+3.4
4,401,886	-				+3.1
4,401,886	-				+2.6
4,401,886	-				+1.9
4,401,886	-				+2.8
4,401,886	-				+3.2
4,401,896	-				+3.2
4,402,030	-				+1.7
4,402,031	+				+2.6
4,402,032	-				+1.7
4,402,032	-				-0.2
4,402,032	-				-0.6
4,402,032	-				+1.4
4,402,049	+				+2.5
4,402,086	+				+3.3
4,402,100	+				+2.8
4,402,226	+		BPHYT_RS19570	0.11	+3.1
4,402,226	+		BPHYT_RS19570	0.11	+2.6
4,402,227	-		BPHYT_RS19570	0.11	+3.1
4,402,227	-		BPHYT_RS19570	0.11	+2.7
4,402,227	-		BPHYT_RS19570	0.11	+3.0
4,402,487	-		BPHYT_RS19570	0.32	+2.9
4,402,659	+		BPHYT_RS19570	0.47	+3.4
4,402,660	-		BPHYT_RS19570	0.47	+2.9
4,402,703	+		BPHYT_RS19570	0.50	+2.9
4,402,703	+		BPHYT_RS19570	0.50	+3.0
4,402,703	+		BPHYT_RS19570	0.50	+3.7
4,402,703	+		BPHYT_RS19570	0.50	+3.3
4,402,704	-		BPHYT_RS19570	0.50	+3.2
4,402,704	-				+2.8
4,402,704	-		BPHYT_RS19570	0.50	+2.6
4,402,729	+		BPHYT_RS19570	0.52	+2.9
4,402,729	+		BPHYT_RS19570	0.52	+3.2
4,402,730	-		BPHYT_RS19570	0.52	+3.0
4,402,739	+		BPHYT_RS19570	0.53	+2.8
4,402,739	+		BPHYT_RS19570	0.53	+2.9
4,402,739	+		BPHYT_RS19570	0.53	+2.6
4,402,739	+		BPHYT_RS19570	0.53	+3.0
4,402,740	-		BPHYT_RS19570	0.53	+3.0
4,402,790	+		BPHYT_RS19570	0.57	+3.3
4,402,790	+		BPHYT_RS19570	0.57	+2.8
4,402,790	+		BPHYT_RS19570	0.57	+3.0
4,402,790	+		BPHYT_RS19570	0.57	+3.0
4,402,790	+		BPHYT_RS19570	0.57	+3.1
4,402,791	-		BPHYT_RS19570	0.58	+4.4
4,402,791	-		BPHYT_RS19570	0.58	+3.4
4,402,791	-		BPHYT_RS19570	0.58	+3.1
4,402,791	-		BPHYT_RS19570	0.58	+3.1
4,402,791	-		BPHYT_RS19570	0.58	+3.2
4,402,977	+		BPHYT_RS19570	0.73	+2.7
4,403,196	-				+3.0
4,403,318	+				+3.3
4,403,577	+				+2.6
4,403,577	+				+2.3
4,403,818	+				+1.7
4,403,826	+				-1.6
4,403,826	+				+0.4
4,403,870	+				-0.7
4,403,870	+				+1.1
4,403,870	+				+1.4
4,403,870	+				+0.4
4,403,870	+				+0.9
4,403,870	+				-1.0
4,403,870	+				+1.7
4,403,870	+				+0.3
4,403,874	+				-1.7
4,403,876	+				+0.5
4,403,880	+				-0.3
4,403,880	+				+0.5
4,403,880	+				+0.3
4,403,890	+				+0.6
4,403,916	+				+0.1
4,403,995	+				+0.7
4,403,995	+				+0.6
4,404,003	+				-0.7
4,404,004	-				+2.3
4,404,036	-				-0.0
4,404,044	+				+1.0
4,404,142	-				-0.2