Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19520 and BPHYT_RS19525 are separated by 94 nucleotides BPHYT_RS19525 and BPHYT_RS19530 are separated by 105 nucleotides BPHYT_RS19530 and BPHYT_RS19535 are separated by 239 nucleotides
BPHYT_RS19520: BPHYT_RS19520 - phenylalanine 4-monooxygenase, at 4,392,660 to 4,393,550
_RS19520
BPHYT_RS19525: BPHYT_RS19525 - pterin-4-alpha-carbinolamine dehydratase, at 4,393,645 to 4,393,935
_RS19525
BPHYT_RS19530: BPHYT_RS19530 - hypothetical protein, at 4,394,041 to 4,394,265
_RS19530
BPHYT_RS19535: BPHYT_RS19535 - XRE family transcriptional regulator, at 4,394,505 to 4,395,191
_RS19535
Position (kb) 4393
4394 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4392.753 kb on + strand, within BPHYT_RS19520 at 4392.789 kb on + strand, within BPHYT_RS19520 at 4393.035 kb on + strand, within BPHYT_RS19520 at 4393.110 kb on + strand, within BPHYT_RS19520 at 4393.110 kb on + strand, within BPHYT_RS19520 at 4393.110 kb on + strand, within BPHYT_RS19520 at 4393.111 kb on - strand, within BPHYT_RS19520 at 4393.111 kb on - strand, within BPHYT_RS19520 at 4393.111 kb on - strand, within BPHYT_RS19520 at 4393.111 kb on - strand, within BPHYT_RS19520 at 4393.111 kb on - strand, within BPHYT_RS19520 at 4393.123 kb on - strand, within BPHYT_RS19520 at 4393.246 kb on - strand, within BPHYT_RS19520 at 4393.285 kb on - strand, within BPHYT_RS19520 at 4393.405 kb on + strand, within BPHYT_RS19520 at 4393.545 kb on - strand at 4393.837 kb on + strand, within BPHYT_RS19525 at 4393.924 kb on - strand at 4393.924 kb on - strand at 4393.934 kb on - strand at 4393.947 kb on + strand at 4393.948 kb on - strand at 4393.948 kb on - strand at 4394.017 kb on - strand at 4394.049 kb on + strand at 4394.050 kb on - strand at 4394.066 kb on + strand, within BPHYT_RS19530 at 4394.066 kb on + strand, within BPHYT_RS19530 at 4394.067 kb on - strand, within BPHYT_RS19530 at 4394.067 kb on - strand, within BPHYT_RS19530 at 4394.131 kb on + strand, within BPHYT_RS19530 at 4394.132 kb on - strand, within BPHYT_RS19530 at 4394.148 kb on - strand, within BPHYT_RS19530 at 4394.479 kb on + strand at 4394.489 kb on + strand at 4394.796 kb on + strand, within BPHYT_RS19535 at 4394.797 kb on - strand, within BPHYT_RS19535 at 4394.797 kb on - strand, within BPHYT_RS19535
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 4,392,753 + BPHYT_RS19520 0.10 +1.9 4,392,789 + BPHYT_RS19520 0.14 -0.4 4,393,035 + BPHYT_RS19520 0.42 +0.3 4,393,110 + BPHYT_RS19520 0.51 +0.2 4,393,110 + BPHYT_RS19520 0.51 +0.5 4,393,110 + BPHYT_RS19520 0.51 +0.4 4,393,111 - BPHYT_RS19520 0.51 -1.2 4,393,111 - BPHYT_RS19520 0.51 +0.3 4,393,111 - BPHYT_RS19520 0.51 +0.1 4,393,111 - BPHYT_RS19520 0.51 +0.6 4,393,111 - BPHYT_RS19520 0.51 +0.6 4,393,123 - BPHYT_RS19520 0.52 -1.6 4,393,246 - BPHYT_RS19520 0.66 +1.4 4,393,285 - BPHYT_RS19520 0.70 -0.4 4,393,405 + BPHYT_RS19520 0.84 -1.6 4,393,545 - -1.7 4,393,837 + BPHYT_RS19525 0.66 -0.3 4,393,924 - -2.2 4,393,924 - +0.2 4,393,934 - +1.0 4,393,947 + -1.1 4,393,948 - +0.4 4,393,948 - -0.2 4,394,017 - +0.3 4,394,049 + +1.3 4,394,050 - -0.3 4,394,066 + BPHYT_RS19530 0.11 -2.6 4,394,066 + BPHYT_RS19530 0.11 -0.3 4,394,067 - BPHYT_RS19530 0.12 -0.3 4,394,067 - BPHYT_RS19530 0.12 +1.1 4,394,131 + BPHYT_RS19530 0.40 +0.3 4,394,132 - BPHYT_RS19530 0.40 +2.4 4,394,148 - BPHYT_RS19530 0.48 +0.2 4,394,479 + -1.5 4,394,489 + +2.3 4,394,796 + BPHYT_RS19535 0.42 -0.7 4,394,797 - BPHYT_RS19535 0.43 +0.4 4,394,797 - BPHYT_RS19535 0.43 -0.0
Or see this region's nucleotide sequence