Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19515

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
4,391,037	+				-0.3
4,391,038	-				+1.1
4,391,171	+				+0.6
4,391,172	-				+0.3
4,391,653	+		BPHYT_RS19510	0.41	+0.8
4,391,654	-		BPHYT_RS19510	0.42	-0.0
4,391,654	-		BPHYT_RS19510	0.42	-0.7
4,391,749	+		BPHYT_RS19510	0.59	-0.5
4,391,749	+		BPHYT_RS19510	0.59	+0.1
4,391,749	+		BPHYT_RS19510	0.59	-0.2
4,391,749	+		BPHYT_RS19510	0.59	-0.1
4,391,749	+		BPHYT_RS19510	0.59	-0.5
4,391,750	-		BPHYT_RS19510	0.59	+0.4
4,391,750	-		BPHYT_RS19510	0.59	-0.0
4,391,750	-		BPHYT_RS19510	0.59	-0.3
4,391,795	+		BPHYT_RS19510	0.68	-0.1
4,391,795	+		BPHYT_RS19510	0.68	+0.3
4,391,965	+				-0.5
4,391,965	+				+0.5
4,392,105	+		BPHYT_RS19515	0.17	+2.3
4,392,106	-		BPHYT_RS19515	0.17	-0.4
4,392,193	+		BPHYT_RS19515	0.35	-1.2
4,392,194	-		BPHYT_RS19515	0.35	+0.9
4,392,436	-		BPHYT_RS19515	0.84	-1.2
4,392,436	-		BPHYT_RS19515	0.84	+0.3
4,392,610	+				+1.4
4,392,753	+		BPHYT_RS19520	0.10	+1.9
4,392,789	+		BPHYT_RS19520	0.14	-0.4
4,393,035	+		BPHYT_RS19520	0.42	+0.3
4,393,110	+		BPHYT_RS19520	0.51	+0.2
4,393,110	+		BPHYT_RS19520	0.51	+0.5
4,393,110	+		BPHYT_RS19520	0.51	+0.4
4,393,111	-		BPHYT_RS19520	0.51	-1.2
4,393,111	-		BPHYT_RS19520	0.51	+0.3
4,393,111	-		BPHYT_RS19520	0.51	+0.1
4,393,111	-		BPHYT_RS19520	0.51	+0.6
4,393,111	-		BPHYT_RS19520	0.51	+0.6
4,393,123	-		BPHYT_RS19520	0.52	-1.6
4,393,246	-		BPHYT_RS19520	0.66	+1.4
4,393,285	-		BPHYT_RS19520	0.70	-0.4
4,393,405	+		BPHYT_RS19520	0.84	-1.6