Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18690

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
4,200,891	+		BPHYT_RS18685	0.31	-0.5
4,200,892	-		BPHYT_RS18685	0.31	-0.3
4,200,892	-		BPHYT_RS18685	0.31	-0.7
4,200,892	-		BPHYT_RS18685	0.31	-1.2
4,201,071	+		BPHYT_RS18685	0.49	+1.2
4,201,072	-		BPHYT_RS18685	0.49	-0.7
4,201,167	+		BPHYT_RS18685	0.58	-0.0
4,201,383	+		BPHYT_RS18685	0.80	+0.2
4,201,384	-		BPHYT_RS18685	0.80	+0.4
4,201,384	-		BPHYT_RS18685	0.80	-0.4
4,201,384	-		BPHYT_RS18685	0.80	-1.2
4,201,695	+				-0.8
4,201,695	+				+0.5
4,201,695	+				+0.4
4,201,715	+				-0.9
4,201,728	+				-1.2
4,201,728	+				-0.3
4,201,728	+				-1.6
4,201,775	-				-1.1
4,201,780	+				+0.9
4,201,780	+				-0.5
4,201,781	-				+0.2
4,201,875	+				-2.3
4,201,875	+				-1.1
4,201,876	-				-1.7
4,201,876	-				-0.5
4,201,876	-				+1.2
4,201,876	-				-0.2
4,201,944	+		BPHYT_RS18690	0.13	+1.7
4,201,944	+		BPHYT_RS18690	0.13	-0.2
4,201,945	-		BPHYT_RS18690	0.13	-0.2
4,201,945	-		BPHYT_RS18690	0.13	-1.2
4,202,082	+		BPHYT_RS18690	0.22	+0.7
4,202,082	+		BPHYT_RS18690	0.22	+0.7
4,202,083	-		BPHYT_RS18690	0.22	-0.2
4,202,097	+		BPHYT_RS18690	0.23	+0.2
4,202,097	+		BPHYT_RS18690	0.23	-0.3
4,202,098	-		BPHYT_RS18690	0.23	-1.7
4,202,098	-		BPHYT_RS18690	0.23	+0.2
4,202,098	-		BPHYT_RS18690	0.23	-1.3
4,202,098	-		BPHYT_RS18690	0.23	-0.8
4,202,098	-		BPHYT_RS18690	0.23	+0.7
4,202,178	+		BPHYT_RS18690	0.28	+0.3
4,202,179	-		BPHYT_RS18690	0.28	-2.8
4,202,179	-				+0.9
4,202,272	-		BPHYT_RS18690	0.33	-2.3
4,202,299	-		BPHYT_RS18690	0.35	-1.6
4,202,352	+		BPHYT_RS18690	0.38	-0.1
4,202,353	-		BPHYT_RS18690	0.38	+0.3
4,202,442	+		BPHYT_RS18690	0.44	-0.6
4,202,641	-		BPHYT_RS18690	0.56	-0.1
4,202,641	-		BPHYT_RS18690	0.56	+0.9
4,202,682	+		BPHYT_RS18690	0.59	-0.5
4,202,683	-		BPHYT_RS18690	0.59	-0.6
4,202,683	-		BPHYT_RS18690	0.59	-0.4
4,202,910	+		BPHYT_RS18690	0.73	-1.3
4,202,911	-		BPHYT_RS18690	0.73	-1.2
4,202,936	-		BPHYT_RS18690	0.74	-0.4
4,203,063	+		BPHYT_RS18690	0.82	-2.8
4,203,064	-		BPHYT_RS18690	0.82	-2.5
4,203,064	-		BPHYT_RS18690	0.82	-0.4
4,203,154	-		BPHYT_RS18690	0.88	-0.0
4,203,167	-		BPHYT_RS18690	0.88	-0.3
4,203,167	-		BPHYT_RS18690	0.88	-0.3
4,203,195	+				+0.2
4,203,195	+				+0.1
4,203,320	-				-0.6
4,203,392	-				-0.0
4,203,392	-				-1.3
4,203,399	+				+0.7
4,203,402	+				+0.3
4,203,402	+				+1.0
4,203,402	+				-1.1
4,203,403	-				+0.2
4,203,403	-				-0.1
4,203,403	-				-0.1
4,203,403	-				+0.2
4,203,598	+				-0.8
4,203,599	-				-0.1
4,203,599	-				-0.2
4,203,599	-				+0.2
4,203,745	+				-0.5
4,203,746	-				-0.7
4,203,746	-				-1.2
4,203,806	-		BPHYT_RS18695	0.13	-0.3
4,203,814	+		BPHYT_RS18695	0.13	-1.8
4,203,951	-		BPHYT_RS18695	0.22	-0.4
4,203,951	-		BPHYT_RS18695	0.22	-0.9
4,203,951	-		BPHYT_RS18695	0.22	+0.0
4,203,952	+		BPHYT_RS18695	0.22	-0.3
4,203,953	-		BPHYT_RS18695	0.22	-0.3
4,203,953	-		BPHYT_RS18695	0.22	-0.0
4,203,967	+		BPHYT_RS18695	0.23	-2.8
4,203,968	-		BPHYT_RS18695	0.23	+0.9
4,203,968	-		BPHYT_RS18695	0.23	-0.2
4,204,048	+		BPHYT_RS18695	0.27	-0.1
4,204,222	+		BPHYT_RS18695	0.38	-0.3
4,204,222	+		BPHYT_RS18695	0.38	-0.3
4,204,222	+		BPHYT_RS18695	0.38	-0.4
4,204,223	-		BPHYT_RS18695	0.38	+0.4
4,204,247	+		BPHYT_RS18695	0.40	-0.1
4,204,248	-		BPHYT_RS18695	0.40	-0.2
4,204,305	-		BPHYT_RS18695	0.43	+0.3
4,204,313	-		BPHYT_RS18695	0.44	-1.3
4,204,313	-		BPHYT_RS18695	0.44	+0.3