Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17825

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17820 and BPHYT_RS17825 are separated by 808 nucleotidesBPHYT_RS17825 and BPHYT_RS17830 overlap by 4 nucleotides BPHYT_RS17820: BPHYT_RS17820 - hypothetical protein, at 4,020,514 to 4,021,227 _RS17820 BPHYT_RS17825: BPHYT_RS17825 - transcriptional regulator, at 4,022,036 to 4,022,776 _RS17825 BPHYT_RS17830: BPHYT_RS17830 - histidine kinase, at 4,022,773 to 4,024,044 _RS17830 Position (kb) 4022 4023Strain fitness (log2 ratio) -2 -1 0 1at 4021.440 kb on + strandat 4021.977 kb on + strandat 4021.978 kb on - strandat 4022.077 kb on - strandat 4022.556 kb on - strand, within BPHYT_RS17825at 4022.688 kb on - strand, within BPHYT_RS17825at 4023.128 kb on + strand, within BPHYT_RS17830at 4023.128 kb on + strand, within BPHYT_RS17830

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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4,021,440 + -0.0
4,021,977 + -0.5
4,021,978 - +1.6
4,022,077 - +1.4
4,022,556 - BPHYT_RS17825 0.70 -0.2
4,022,688 - BPHYT_RS17825 0.88 +0.5
4,023,128 + BPHYT_RS17830 0.28 -1.3
4,023,128 + BPHYT_RS17830 0.28 -2.4

Or see this region's nucleotide sequence