Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16345

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
3,708,425	-		BPHYT_RS16340	0.44	+0.8
3,708,621	-		BPHYT_RS16340	0.67	+2.0
3,708,621	-		BPHYT_RS16340	0.67	+1.0
3,708,691	+		BPHYT_RS16340	0.75	+1.2
3,708,745	+		BPHYT_RS16340	0.81	+1.3
3,708,746	-		BPHYT_RS16340	0.81	+2.2
3,708,746	-		BPHYT_RS16340	0.81	+0.5
3,708,746	-		BPHYT_RS16340	0.81	-1.5
3,708,750	-		BPHYT_RS16340	0.81	-1.2
3,708,803	-		BPHYT_RS16340	0.87	-0.4
3,708,803	-		BPHYT_RS16340	0.87	+0.4
3,708,803	-		BPHYT_RS16340	0.87	+1.8
3,708,916	+				+1.0
3,708,916	+				+0.3
3,708,916	+				+1.5
3,708,916	+				+2.3
3,708,917	-				+0.4
3,708,917	-				+0.2
3,708,917	-				+1.9
3,708,917	-				+1.4
3,708,917	-				+1.5
3,708,917	-				-0.2
3,708,917	-				+1.9
3,709,001	-				+0.8
3,709,029	+				+2.2
3,709,040	+				+2.3
3,709,040	+				+1.9
3,709,041	-				-0.1
3,709,041	-				+0.8
3,709,454	+		BPHYT_RS16345	0.35	+3.7
3,709,455	-		BPHYT_RS16345	0.36	+1.4
3,709,455	-		BPHYT_RS16345	0.36	+0.6
3,709,655	+		BPHYT_RS16345	0.53	+0.8
3,709,656	-		BPHYT_RS16345	0.53	+1.6
3,709,883	+		BPHYT_RS16345	0.72	+1.8
3,709,884	-		BPHYT_RS16345	0.72	+1.2
3,709,884	-		BPHYT_RS16345	0.72	+1.0
3,709,884	-		BPHYT_RS16345	0.72	+1.7
3,710,192	+				+0.5
3,710,193	-				+1.2
3,710,339	+		BPHYT_RS16350	0.18	+2.0
3,710,340	-		BPHYT_RS16350	0.18	-1.4
3,710,340	-		BPHYT_RS16350	0.18	-1.2
3,710,356	+		BPHYT_RS16350	0.20	+1.9
3,710,357	-		BPHYT_RS16350	0.21	+0.5
3,710,435	+		BPHYT_RS16350	0.31	+1.7
3,710,436	-		BPHYT_RS16350	0.31	+0.3
3,710,666	-				+1.2
3,710,881	+				-0.3
3,710,882	-				+0.9
3,710,882	-				-0.7
3,710,882	-				+0.3
3,710,882	-				+0.9
3,710,989	+				-0.2
3,710,989	+				-0.5
3,710,989	+				-0.4
3,710,990	-				-0.0
3,710,990	-				+1.8
3,710,996	+				+0.3
3,711,054	+				-0.2
3,711,054	+				-1.9
3,711,054	+				-0.8
3,711,054	+				-0.1
3,711,054	+				+0.1
3,711,055	-				-1.2
3,711,055	-				+1.4
3,711,055	-				-0.1
3,711,097	-				-2.1