Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14530

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
3,312,050	+		BPHYT_RS14525	0.52	-0.4
3,312,051	-		BPHYT_RS14525	0.53	+1.1
3,312,051	-		BPHYT_RS14525	0.53	+0.6
3,312,051	-		BPHYT_RS14525	0.53	+0.3
3,312,204	+		BPHYT_RS14525	0.63	+1.3
3,312,217	+		BPHYT_RS14525	0.64	-0.2
3,312,218	-		BPHYT_RS14525	0.64	+1.0
3,312,218	-		BPHYT_RS14525	0.64	-0.2
3,312,425	-		BPHYT_RS14525	0.79	+2.3
3,312,428	+		BPHYT_RS14525	0.79	+0.9
3,312,428	+		BPHYT_RS14525	0.79	-0.1
3,312,429	-		BPHYT_RS14525	0.79	-1.7
3,312,479	+		BPHYT_RS14525	0.82	-1.7
3,312,480	-		BPHYT_RS14525	0.83	-0.3
3,312,574	+		BPHYT_RS14525	0.89	-1.5
3,312,574	+		BPHYT_RS14525	0.89	-0.8
3,312,730	-				-0.8
3,312,730	-				+0.8
3,312,748	-				+0.1
3,313,033	+		BPHYT_RS14530	0.35	+0.2
3,313,034	-		BPHYT_RS14530	0.35	+1.4
3,313,034	-		BPHYT_RS14530	0.35	+0.9
3,313,060	-		BPHYT_RS14530	0.39	+0.1
3,313,107	+		BPHYT_RS14530	0.46	+0.2
3,313,222	+		BPHYT_RS14530	0.63	-1.0
3,313,363	+		BPHYT_RS14530	0.84	-0.3
3,313,493	+				+0.4
3,313,494	-				-0.9
3,313,494	-				+0.7
3,313,494	-				-2.1
3,313,498	+				+0.8
3,313,510	+				-0.5
3,313,510	+				-0.4
3,313,511	-				+0.5
3,313,511	-				-0.3
3,313,512	+				-1.1
3,313,512	+				+0.4
3,313,553	-				+1.0
3,313,578	+				-1.6
3,313,578	+				+0.4
3,313,579	-				+1.1
3,313,584	-				-0.8
3,313,661	-				+0.4
3,313,669	+				-0.8
3,313,670	-				-0.3
3,313,670	-				-0.0
3,313,771	+		BPHYT_RS14535	0.14	+0.9
3,313,921	+		BPHYT_RS14535	0.26	+0.5
3,313,999	+		BPHYT_RS14535	0.33	-1.2
3,314,000	-		BPHYT_RS14535	0.33	+1.0
3,314,000	-		BPHYT_RS14535	0.33	+0.1
3,314,036	-		BPHYT_RS14535	0.36	-1.8
3,314,099	-		BPHYT_RS14535	0.41	-0.1
3,314,099	-		BPHYT_RS14535	0.41	+0.8
3,314,197	+		BPHYT_RS14535	0.49	-0.6
3,314,300	-		BPHYT_RS14535	0.58	+0.0
3,314,383	+		BPHYT_RS14535	0.65	+0.7
3,314,384	-		BPHYT_RS14535	0.65	+0.6
3,314,402	+				+0.7
3,314,403	-		BPHYT_RS14535	0.66	+0.5
3,314,403	-		BPHYT_RS14535	0.66	+1.3
3,314,460	-		BPHYT_RS14535	0.71	-0.2
3,314,460	-		BPHYT_RS14535	0.71	+0.5
3,314,460	-		BPHYT_RS14535	0.71	+1.8