Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13040

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
2,981,288	-				-0.2
2,981,377	+				+1.9
2,981,378	-				-0.4
2,981,383	+				-1.5
2,981,384	-				-0.6
2,981,401	+				+0.3
2,981,401	+				+0.4
2,981,401	+				+1.5
2,981,401	+				-1.4
2,981,402	-				+0.7
2,981,402	-				-1.0
2,981,402	-				+0.7
2,981,446	+				-1.0
2,981,447	-				+0.4
2,981,447	-				+0.0
2,981,622	-				-0.6
2,981,622	-				-0.9
2,981,701	-				+0.1
2,981,745	-				-0.1
2,981,768	+				+0.3
2,982,111	-		BPHYT_RS13040	0.28	+0.4
2,982,224	+		BPHYT_RS13040	0.47	+2.1
2,982,541	+				+0.8
2,982,541	+				+0.2
2,982,542	-				-1.3
2,982,738	+		BPHYT_RS13045	0.19	+0.6
2,982,738	+		BPHYT_RS13045	0.19	-1.5
2,982,738	+		BPHYT_RS13045	0.19	-0.7
2,982,843	+		BPHYT_RS13045	0.39	-2.4
2,982,844	-		BPHYT_RS13045	0.39	-0.4
2,982,844	-		BPHYT_RS13045	0.39	-2.1
2,982,844	-		BPHYT_RS13045	0.39	-2.4
2,982,885	+		BPHYT_RS13045	0.47	-0.5
2,982,885	+		BPHYT_RS13045	0.47	-0.7
2,982,906	+		BPHYT_RS13045	0.50	-0.0
2,983,523	-		BPHYT_RS13050	0.27	+0.5
2,983,523	-		BPHYT_RS13050	0.27	+1.0
2,983,526	-		BPHYT_RS13050	0.27	-0.1
2,983,526	-		BPHYT_RS13050	0.27	-1.4