Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12590
Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO3 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,874,339 | - | -0.8 | |||
2,874,657 | - | BPHYT_RS12590 | 0.28 | +1.5 | |
2,875,197 | - | BPHYT_RS12590 | 0.75 | +1.2 | |
2,875,368 | - | BPHYT_RS12590 | 0.89 | +1.2 | |
2,875,585 | - | +0.9 | |||
2,875,660 | + | +1.2 | |||
2,875,661 | - | -1.1 | |||
2,876,126 | + | +1.9 | |||
2,876,126 | + | +0.7 | |||
2,876,141 | + | -1.1 | |||
2,876,161 | + | -0.4 |
Or see this region's nucleotide sequence