Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11970
Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO3 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,723,163 | - | -0.8 | |||
2,723,163 | - | -0.4 | |||
2,723,318 | + | -2.1 | |||
2,723,318 | + | -0.7 | |||
2,723,321 | + | -0.2 | |||
2,723,322 | - | +0.1 | |||
2,723,355 | + | -0.4 | |||
2,723,916 | + | BPHYT_RS11965 | 0.67 | +0.8 | |
2,724,482 | + | BPHYT_RS11970 | 0.83 | -1.8 | |
2,724,719 | + | +3.8 | |||
2,725,292 | - | BPHYT_RS11975 | 0.46 | +0.6 |
Or see this region's nucleotide sequence