Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09915

Experiment: 36hr PHYTO3 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS09910 and BPHYT_RS09915 are separated by 198 nucleotidesBPHYT_RS09915 and BPHYT_RS09920 are separated by 310 nucleotides BPHYT_RS09910: BPHYT_RS09910 - tyramine oxidase, at 2,255,939 to 2,257,924 _RS09910 BPHYT_RS09915: BPHYT_RS09915 - AraC family transcriptional regulator, at 2,258,123 to 2,259,127 _RS09915 BPHYT_RS09920: BPHYT_RS09920 - amino acid permease, at 2,259,438 to 2,260,841 _RS09920 Position (kb) 2258 2259 2260Strain fitness (log2 ratio) -1 0 1at 2257.411 kb on - strand, within BPHYT_RS09910at 2257.924 kb on + strandat 2259.660 kb on + strand, within BPHYT_RS09920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
remove
2,257,411 - BPHYT_RS09910 0.74 +0.2
2,257,924 + +0.5
2,259,660 + BPHYT_RS09920 0.16 -1.5

Or see this region's nucleotide sequence