Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09350

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
2,118,243	+				+1.3
2,118,335	-				-0.9
2,118,365	+				-2.0
2,118,365	+				+0.3
2,118,365	+				+0.5
2,118,366	-				+1.3
2,118,366	-				+0.1
2,118,366	-				-0.4
2,118,402	+				+0.9
2,118,402	+				+0.3
2,118,403	-				-0.2
2,118,403	-				+0.9
2,118,859	-		BPHYT_RS09345	0.75	+0.3
2,118,866	-		BPHYT_RS09345	0.77	+0.6
2,119,035	-				+0.8
2,119,079	-				+0.1
2,119,090	-				+1.3
2,119,387	+		BPHYT_RS09350	0.26	-0.1
2,119,388	-		BPHYT_RS09350	0.26	-0.2
2,119,388	-		BPHYT_RS09350	0.26	-1.0
2,119,540	-		BPHYT_RS09350	0.39	-0.4
2,119,824	+		BPHYT_RS09350	0.64	-2.2
2,119,896	+		BPHYT_RS09350	0.70	-0.3
2,119,897	-		BPHYT_RS09350	0.70	-0.6
2,119,915	-		BPHYT_RS09350	0.72	+0.1
2,119,915	-		BPHYT_RS09350	0.72	+0.5
2,120,772	-		BPHYT_RS09355	0.44	+0.8
2,120,772	-		BPHYT_RS09355	0.44	-0.0
2,120,801	-		BPHYT_RS09355	0.48	+1.1