Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08125

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
1,857,942	+				+0.4
1,857,943	-				+2.0
1,857,969	-				+0.9
1,858,019	-				+0.2
1,858,019	-				+0.3
1,858,049	+				+1.2
1,858,050	-				+1.2
1,858,050	-				+0.5
1,858,214	+		BPHYT_RS08125	0.16	+0.2
1,858,215	-		BPHYT_RS08125	0.16	+1.6
1,858,215	-		BPHYT_RS08125	0.16	+1.3
1,858,231	-		BPHYT_RS08125	0.18	-0.2
1,858,265	+		BPHYT_RS08125	0.21	+1.0
1,858,265	+		BPHYT_RS08125	0.21	+1.3
1,858,266	-		BPHYT_RS08125	0.21	+0.5
1,858,266	-		BPHYT_RS08125	0.21	+1.2
1,858,266	-		BPHYT_RS08125	0.21	+1.4
1,858,266	-		BPHYT_RS08125	0.21	+0.9
1,858,266	-		BPHYT_RS08125	0.21	+1.2
1,858,517	+		BPHYT_RS08125	0.44	+0.3
1,858,518	-		BPHYT_RS08125	0.44	-0.0
1,858,639	+		BPHYT_RS08125	0.55	-0.9
1,858,661	+		BPHYT_RS08125	0.57	+0.7
1,858,661	+		BPHYT_RS08125	0.57	-0.1
1,858,662	-		BPHYT_RS08125	0.57	+1.4
1,858,816	+		BPHYT_RS08125	0.71	+1.2
1,858,821	+		BPHYT_RS08125	0.72	+1.6
1,858,821	+		BPHYT_RS08125	0.72	+1.5
1,858,822	-		BPHYT_RS08125	0.72	+1.3
1,858,822	-		BPHYT_RS08125	0.72	+1.0
1,858,962	-		BPHYT_RS08125	0.85	+0.7
1,858,962	-		BPHYT_RS08125	0.85	+0.0
1,858,962	-		BPHYT_RS08125	0.85	+0.3
1,859,015	+		BPHYT_RS08125	0.89	+2.3
1,859,096	-				+2.2
1,859,116	+				+0.7
1,859,116	+				+0.5
1,859,233	+				+0.4
1,859,234	-				+0.2
1,859,234	-				-0.2
1,859,235	+				+0.9
1,859,236	-				-0.1
1,859,275	+				+0.0
1,859,434	-		BPHYT_RS08130	0.32	+0.4
1,859,435	+		BPHYT_RS08130	0.32	-1.2
1,859,601	-		BPHYT_RS08130	0.69	-0.1
1,859,766	+				+0.1
1,859,767	-				-0.6
1,859,905	+		BPHYT_RS08135	0.11	-0.2
1,859,960	-		BPHYT_RS08135	0.22	-0.3